Gene annotation
Transcriptome id Sobic.001G399800.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5SA13
Pfam PF13812 PF14432 PF13041 PF01535
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50990 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g02280.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a052608
Brachypodium KQK22055
Barley HORVU4Hr1G054650.18 , HORVU4Hr1G054650.12 , HORVU4Hr1G054650.21 , HORVU4Hr1G054650.23
Wheat TraesCS4A02G117200 , TraesCS4B02G187200
Populus PNT56392


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
2 Sobic.001G522100 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
3 Sobic.004G261600 expressed protein -
4 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
5 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
6 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
7 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
8 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
9 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
10 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
11 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
12 Sobic.007G056600 expressed protein -
13 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
14 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
15 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
16 Sobic.004G004300 expressed protein -
17 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
18 Sobic.010G072400 SAC domain containing protein, putative, expressed -
19 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
20 Sobic.004G004200 expressed protein -


Gene co-expression network
sample Sobic001G399800 Sobic001G399800 Sobic001G251200 Sobic001G251200 Sobic001G399800--Sobic001G251200 Sobic001G522100 Sobic001G522100 Sobic001G399800--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic001G399800--Sobic004G261600 Sobic002G383600 Sobic002G383600 Sobic001G399800--Sobic002G383600 Sobic003G104000 Sobic003G104000 Sobic001G399800--Sobic003G104000 Sobic002G370200 Sobic002G370200 Sobic001G399800--Sobic002G370200 Sobic001G128300 Sobic001G128300 Sobic001G399800--Sobic001G128300 Sobic010G227100 Sobic010G227100 Sobic001G399800--Sobic010G227100 Sobic007G180600 Sobic007G180600 Sobic001G399800--Sobic007G180600 Sobic003G362600 Sobic003G362600 Sobic001G251200--Sobic003G362600 Sobic001G251200--Sobic001G128300 Sobic009G165700 Sobic009G165700 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic001G251200--Sobic004G261600 Sobic001G451400 Sobic001G451400 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic006G131000 Sobic006G131000 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100 Sobic002G028700 Sobic002G028700 Sobic001G522100--Sobic002G028700 Sobic001G522100--Sobic004G261600 Sobic001G522100--Sobic001G399800 Sobic003G209200 Sobic003G209200 Sobic001G522100--Sobic003G209200 Sobic001G522100--Sobic007G180600 Sobic001G522100--Sobic001G251200 Sobic004G228800 Sobic004G228800 Sobic001G522100--Sobic004G228800 Sobic006G077300 Sobic006G077300 Sobic001G522100--Sobic006G077300 Sobic007G005500 Sobic007G005500 Sobic001G522100--Sobic007G005500 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic004G261600--Sobic003G209200 Sobic004G261600--Sobic003G104000 Sobic004G261600--Sobic007G005500 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic006G257800 Sobic006G257800 Sobic002G383600--Sobic006G257800 Sobic002G383600--Sobic010G227100 Sobic006G051800 Sobic006G051800 Sobic002G383600--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic002G383600--Sobic009G074400 Sobic004G001500 Sobic004G001500 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic004G189200 Sobic004G189200 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic002G383600--Sobic007G190000 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G370200--Sobic009G165700 Sobic003G196300 Sobic003G196300 Sobic002G370200--Sobic003G196300 Sobic001G534700 Sobic001G534700 Sobic002G370200--Sobic001G534700 Sobic003G316500 Sobic003G316500 Sobic002G370200--Sobic003G316500 Sobic002G370200--Sobic001G128300 Sobic010G247800 Sobic010G247800 Sobic002G370200--Sobic010G247800 Sobic002G042600 Sobic002G042600 Sobic002G370200--Sobic002G042600 Sobic002G370200--Sobic003G362600 Sobic002G370200--Sobic001G043100 Sobic001G128300--Sobic009G165700 Sobic001G128300--Sobic001G451400 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic003G198800 Sobic003G198800 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic010G227100--Sobic002G383600 Sobic003G372500 Sobic003G372500 Sobic010G227100--Sobic003G372500 Sobic010G227100--Sobic006G275100 Sobic010G227100--Sobic007G190000 Sobic007G075400 Sobic007G075400 Sobic010G227100--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G227100--Sobic002G146300 Sobic010G227100--Sobic009G074400 Sobic009G053900 Sobic009G053900 Sobic010G227100--Sobic009G053900 Sobic007G180600--Sobic001G251200 Sobic007G180600--Sobic004G228800 Sobic007G180600--Sobic006G131000 Sobic008G185500 Sobic008G185500 Sobic007G180600--Sobic008G185500 Sobic001G477700 Sobic001G477700 Sobic007G180600--Sobic001G477700 Sobic007G180600--Sobic001G522100 Sobic007G180600--Sobic004G261600 Sobic007G042900 Sobic007G042900 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200
Octagon: transcription factors


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