Gene annotation
Transcriptome id Sobic.001G509800.2,Sobic.001G509800.1
Synonym PDLP2, Sb01g047590
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
cysteine-rich repeat secretory protein precursor, putative, expressed
UniProt C5WYW6
Pfam PF01657
Panther DB PTHR32080 PTHR32080:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33330 : plasmodesmata-located protein 3
RAP-DB (Rice) LOC_Os04g45460.1 : cysteine-rich repeat secretory protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a000555
Brachypodium PNT78236 , KQK23729
Barley HORVU4Hr1G084110.1 , HORVU4Hr1G084110.2
Wheat TraesCS4B02G342500 , TraesCS4D02G338100 , TraesCS5A02G511600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G130001 - K08775: BRCA2, breast cancer 2 susceptibility protein
2 Sobic.003G342800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ankyrin homolog precursor, putative, expressed -
3 Sobic.004G162600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.004G244500 dynamin, putative, expressed K01528: dynamin 1/3
5 Sobic.007G193500 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659910)@OsSPL16 - SBP-box gene family member, expressed -
6 Sobic.010G196200 OsSub51 - Putative Subtilisin homologue, expressed -
7 Sobic.006G069400 expressed protein -
8 Sobic.001G086100 - -
9 Sobic.001G003300 ABC-2 type transporter, putative, expressed -
10 Sobic.010G242200 expressed protein -
11 Sobic.003G250340 - K07976: Rab family, other
12 Sobic.002G188200 RING-H2 finger protein, putative, expressed -
13 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
14 Sobic.003G130100 expressed protein -
15 Sobic.001G022000 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
16 Sobic.001G169000 expressed protein -
17 Sobic.002G267300 expressed protein -
18 Sobic.004G293600 OsFBX15 - F-box domain containing protein, expressed -
19 Sobic.004G216100 cysteine proteinase inhibitor precursor, putative, expressed -
20 Sobic.009G043200 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -


Gene co-expression network
sample Sobic001G509800 Sobic001G509800 Sobic004G130001 Sobic004G130001 Sobic001G509800--Sobic004G130001 Sobic003G342800 Sobic003G342800 Sobic001G509800--Sobic003G342800 Sobic004G162600 Sobic004G162600 Sobic001G509800--Sobic004G162600 Sobic004G244500 Sobic004G244500 Sobic001G509800--Sobic004G244500 Sobic007G193500 Sobic007G193500 Sobic001G509800--Sobic007G193500 Sobic010G196200 Sobic010G196200 Sobic001G509800--Sobic010G196200 Sobic006G069400 Sobic006G069400 Sobic001G509800--Sobic006G069400 Sobic001G086100 Sobic001G086100 Sobic001G509800--Sobic001G086100 Sobic001G003300 Sobic001G003300 Sobic001G509800--Sobic001G003300 Sobic002G188200 Sobic002G188200 Sobic004G130001--Sobic002G188200 Sobic004G130001--Sobic001G003300 Sobic004G130001--Sobic010G196200 Sobic008G045300 Sobic008G045300 Sobic004G130001--Sobic008G045300 Sobic004G328800 Sobic004G328800 Sobic004G130001--Sobic004G328800 Sobic002G237600 Sobic002G237600 Sobic004G130001--Sobic002G237600 Sobic008G175933 Sobic008G175933 Sobic004G130001--Sobic008G175933 Sobic002G289701 Sobic002G289701 Sobic004G130001--Sobic002G289701 Sobic004G130001--Sobic007G193500 Sobic010G135800 Sobic010G135800 Sobic003G342800--Sobic010G135800 Sobic003G342800--Sobic001G509800 Sobic001G022000 Sobic001G022000 Sobic003G342800--Sobic001G022000 Sobic002G289900 Sobic002G289900 Sobic003G342800--Sobic002G289900 Sobic003G342800--Sobic007G193500 Sobic003G342800--Sobic004G130001 Sobic002G267300 Sobic002G267300 Sobic003G342800--Sobic002G267300 Sobic004G216100 Sobic004G216100 Sobic003G342800--Sobic004G216100 Sobic003G342800--Sobic006G069400 Sobic009G187900 Sobic009G187900 Sobic004G162600--Sobic009G187900 Sobic004G205400 Sobic004G205400 Sobic004G162600--Sobic004G205400 Sobic006G260101 Sobic006G260101 Sobic004G162600--Sobic006G260101 Sobic003G250340 Sobic003G250340 Sobic004G162600--Sobic003G250340 Sobic009G043200 Sobic009G043200 Sobic004G162600--Sobic009G043200 Sobic004G162600--Sobic010G196200 Sobic005G116601 Sobic005G116601 Sobic004G162600--Sobic005G116601 Sobic002G334900 Sobic002G334900 Sobic004G162600--Sobic002G334900 Sobic004G096000 Sobic004G096000 Sobic004G162600--Sobic004G096000 Sobic004G244500--Sobic009G187900 Sobic004G244500--Sobic004G162600 Sobic005G038700 Sobic005G038700 Sobic004G244500--Sobic005G038700 Sobic001G087500 Sobic001G087500 Sobic004G244500--Sobic001G087500 Sobic004G244500--Sobic004G205400 Sobic004G244500--Sobic005G116601 Sobic004G244500--Sobic003G250340 Sobic010G118401 Sobic010G118401 Sobic004G244500--Sobic010G118401 Sobic004G244500--Sobic010G196200 Sobic008G045232 Sobic008G045232 Sobic007G193500--Sobic008G045232 Sobic005G085800 Sobic005G085800 Sobic007G193500--Sobic005G085800 Sobic007G193500--Sobic002G289701 Sobic008G053000 Sobic008G053000 Sobic007G193500--Sobic008G053000 Sobic005G030200 Sobic005G030200 Sobic007G193500--Sobic005G030200 Sobic001G152500 Sobic001G152500 Sobic007G193500--Sobic001G152500 Sobic001G189800 Sobic001G189800 Sobic007G193500--Sobic001G189800 Sobic007G007650 Sobic007G007650 Sobic007G193500--Sobic007G007650 Sobic001G482500 Sobic001G482500 Sobic007G193500--Sobic001G482500 Sobic010G196200--Sobic002G188200 Sobic010G196200--Sobic003G250340 Sobic010G196200--Sobic008G045300 Sobic010G196200--Sobic004G328800 Sobic006G044466 Sobic006G044466 Sobic010G196200--Sobic006G044466 Sobic004G325832 Sobic004G325832 Sobic010G196200--Sobic004G325832 Sobic010G196200--Sobic001G003300 Sobic010G196200--Sobic008G175933 Sobic002G152000 Sobic002G152000 Sobic010G196200--Sobic002G152000 Sobic003G212800 Sobic003G212800 Sobic006G069400--Sobic003G212800 Sobic006G069400--Sobic007G193500 Sobic009G133100 Sobic009G133100 Sobic006G069400--Sobic009G133100 Sobic006G069400--Sobic001G022000 Sobic006G069400--Sobic005G030200 Sobic006G069400--Sobic008G045232 Sobic006G069400--Sobic005G085800 Sobic006G069400--Sobic002G289701 Sobic009G196100 Sobic009G196100 Sobic006G069400--Sobic009G196100 Sobic004G293600 Sobic004G293600 Sobic001G086100--Sobic004G293600 Sobic002G345100 Sobic002G345100 Sobic001G086100--Sobic002G345100 Sobic002G046400 Sobic002G046400 Sobic001G086100--Sobic002G046400 Sobic005G025500 Sobic005G025500 Sobic001G086100--Sobic005G025500 Sobic003G002800 Sobic003G002800 Sobic001G086100--Sobic003G002800 Sobic001G086100--Sobic004G328800 Sobic006G144900 Sobic006G144900 Sobic001G086100--Sobic006G144900 Sobic009G142600 Sobic009G142600 Sobic001G086100--Sobic009G142600 Sobic005G014600 Sobic005G014600 Sobic001G086100--Sobic005G014600 Sobic001G003300--Sobic002G188200 Sobic001G003300--Sobic004G328800 Sobic001G003300--Sobic008G175933 Sobic001G003300--Sobic006G044466 Sobic001G003300--Sobic010G196200 Sobic001G190600 Sobic001G190600 Sobic001G003300--Sobic001G190600 Sobic001G003300--Sobic005G025500 Sobic005G207600 Sobic005G207600 Sobic001G003300--Sobic005G207600 Sobic010G146350 Sobic010G146350 Sobic001G003300--Sobic010G146350
Octagon: transcription factors


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