Gene annotation
Transcriptome id Sobic.002G017700.1
Synonym Sb02g001690
Functional annotation expressed protein
UniProt A0A1W0W1T7
Pfam PF08224
Panther DB PTHR33377 PTHR33377:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g02970.1 : expressed protein
MaizeGDB (Corn) Zm00025a045636 , Zm00025a044935
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
2 Sobic.009G193700 transmembrane protein 56, putative, expressed -
3 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
4 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
5 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.010G248900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
7 Sobic.006G174400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
8 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
9 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
10 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
11 Sobic.002G100700 expressed protein -
12 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
13 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G030700 receptor kinase, putative, expressed -
15 Sobic.004G097400 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16
16 Sobic.001G150200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK53b - OsWAK receptor-like protein kinase, expressed -
17 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
19 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
20 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G017700 Sobic002G017700 Sobic001G438600 Sobic001G438600 Sobic002G017700--Sobic001G438600 Sobic009G193700 Sobic009G193700 Sobic002G017700--Sobic009G193700 Sobic001G322700 Sobic001G322700 Sobic002G017700--Sobic001G322700 Sobic003G329400 Sobic003G329400 Sobic002G017700--Sobic003G329400 Sobic004G260000 Sobic004G260000 Sobic002G017700--Sobic004G260000 Sobic010G248900 Sobic010G248900 Sobic002G017700--Sobic010G248900 Sobic006G174400 Sobic006G174400 Sobic002G017700--Sobic006G174400 Sobic001G301700 Sobic001G301700 Sobic002G017700--Sobic001G301700 Sobic001G325200 Sobic001G325200 Sobic002G017700--Sobic001G325200 Sobic001G438600--Sobic001G301700 Sobic004G355000 Sobic004G355000 Sobic001G438600--Sobic004G355000 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic001G438600--Sobic003G428400 Sobic007G068100 Sobic007G068100 Sobic001G438600--Sobic007G068100 Sobic001G015500 Sobic001G015500 Sobic001G438600--Sobic001G015500 Sobic001G474500 Sobic001G474500 Sobic001G438600--Sobic001G474500 Sobic007G186200 Sobic007G186200 Sobic001G438600--Sobic007G186200 Sobic010G107000 Sobic010G107000 Sobic009G193700--Sobic010G107000 Sobic008G062200 Sobic008G062200 Sobic009G193700--Sobic008G062200 Sobic009G211400 Sobic009G211400 Sobic009G193700--Sobic009G211400 Sobic003G355600 Sobic003G355600 Sobic009G193700--Sobic003G355600 Sobic009G029600 Sobic009G029600 Sobic009G193700--Sobic009G029600 Sobic009G193700--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic009G193700--Sobic003G219600 Sobic006G199000 Sobic006G199000 Sobic009G193700--Sobic006G199000 Sobic001G089800 Sobic001G089800 Sobic009G193700--Sobic001G089800 Sobic001G322700--Sobic003G329400 Sobic001G322700--Sobic001G325200 Sobic001G322700--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic001G322700--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic001G322700--Sobic004G101900 Sobic001G322700--Sobic010G107000 Sobic003G149200 Sobic003G149200 Sobic001G322700--Sobic003G149200 Sobic001G322700--Sobic001G015500 Sobic002G304000 Sobic002G304000 Sobic001G322700--Sobic002G304000 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic005G018500 Sobic005G018500 Sobic004G260000--Sobic005G018500 Sobic009G054500 Sobic009G054500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G255000 Sobic004G255000 Sobic004G260000--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic004G260000--Sobic001G249300 Sobic004G260000--Sobic008G062200 Sobic007G187300 Sobic007G187300 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic010G248900--Sobic001G249300 Sobic006G030700 Sobic006G030700 Sobic010G248900--Sobic006G030700 Sobic001G512800 Sobic001G512800 Sobic010G248900--Sobic001G512800 Sobic010G248900--Sobic005G018500 Sobic010G248900--Sobic009G054500 Sobic003G259200 Sobic003G259200 Sobic010G248900--Sobic003G259200 Sobic001G280200 Sobic001G280200 Sobic010G248900--Sobic001G280200 Sobic010G248900--Sobic009G226300 Sobic006G100332 Sobic006G100332 Sobic010G248900--Sobic006G100332 Sobic002G195000 Sobic002G195000 Sobic006G174400--Sobic002G195000 Sobic001G132000 Sobic001G132000 Sobic006G174400--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic006G174400--Sobic003G061400 Sobic004G333200 Sobic004G333200 Sobic006G174400--Sobic004G333200 Sobic006G127100 Sobic006G127100 Sobic006G174400--Sobic006G127100 Sobic006G174400--Sobic002G304000 Sobic003G087200 Sobic003G087200 Sobic006G174400--Sobic003G087200 Sobic003G184900 Sobic003G184900 Sobic006G174400--Sobic003G184900 Sobic010G210200 Sobic010G210200 Sobic006G174400--Sobic010G210200 Sobic001G301700--Sobic001G438600 Sobic001G301700--Sobic001G207400 Sobic001G301700--Sobic001G015500 Sobic002G266000 Sobic002G266000 Sobic001G301700--Sobic002G266000 Sobic008G093000 Sobic008G093000 Sobic001G301700--Sobic008G093000 Sobic002G270500 Sobic002G270500 Sobic001G301700--Sobic002G270500 Sobic002G430000 Sobic002G430000 Sobic001G301700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G301700--Sobic002G111000 Sobic010G205200 Sobic010G205200 Sobic001G301700--Sobic010G205200 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic001G325200--Sobic003G355600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.