Gene annotation
Transcriptome id Sobic.002G168800.4,Sobic.002G168800.5,Sobic.002G168800.3,Sobic.002G168800.6
Synonym CCD1, ATCCD1, ATNCED1, Sb02g021490, NCED1
Functional annotation carotenoid cleavage dioxygenase, putative, expressed
UniProt A0A1W0W4K3 , A0A1W0W4F0 , A0A1B6QBT6
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF30
NCBI CDD KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63520 : carotenoid cleavage dioxygenase 1
RAP-DB (Rice) LOC_Os09g15240.1 : carotenoid cleavage dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a046460
Brachypodium PNT64389 , PNT64388
Barley HORVU5Hr1G055740.20 , HORVU5Hr1G055740.2 , HORVU5Hr1G055740.3 , HORVU5Hr1G055740.1 , HORVU5Hr1G055740.6 , HORVU5Hr1G055740.4 , HORVU5Hr1G055740.5 , HORVU5Hr1G055740.8 , HORVU5Hr1G055740.9 , HORVU5Hr1G055740.10 , HORVU5Hr1G055740.13 , HORVU5Hr1G055740.14 , HORVU5Hr1G055740.15 , HORVU5Hr1G055740.16 , HORVU5Hr1G055740.17 , HORVU5Hr1G055740.18 , HORVU5Hr1G055740.19
Wheat TraesCS5B02G180500 , TraesCS5D02G186900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G206000 dirigent, putative, expressed -
2 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
3 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e
4 Sobic.010G268700 expansin precursor, putative, expressed -
5 Sobic.010G013000 interacting protein of DMI3, putative, expressed -
6 Sobic.004G346300 expressed protein -
7 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
8 Sobic.005G060200 cytochrome P450, putative, expressed -
9 Sobic.002G025500 expressed protein -
10 Sobic.005G162400 GATA transcription factor 25, putative, expressed -
11 Sobic.010G245400 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G419200 xylanase inhibitor, putative, expressed -
13 Sobic.001G232400 - -
14 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.004G228600 - -
16 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
18 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
19 Sobic.005G216400 plant protein of unknown function domain containing protein, expressed -
20 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3


Gene co-expression network
sample Sobic002G168800 Sobic002G168800 Sobic005G206000 Sobic005G206000 Sobic002G168800--Sobic005G206000 Sobic005G177100 Sobic005G177100 Sobic002G168800--Sobic005G177100 Sobic004G002901 Sobic004G002901 Sobic002G168800--Sobic004G002901 Sobic010G268700 Sobic010G268700 Sobic002G168800--Sobic010G268700 Sobic010G013000 Sobic010G013000 Sobic002G168800--Sobic010G013000 Sobic004G346300 Sobic004G346300 Sobic002G168800--Sobic004G346300 Sobic005G220300 Sobic005G220300 Sobic002G168800--Sobic005G220300 Sobic005G060200 Sobic005G060200 Sobic002G168800--Sobic005G060200 Sobic002G025500 Sobic002G025500 Sobic002G168800--Sobic002G025500 Sobic001G301000 Sobic001G301000 Sobic005G206000--Sobic001G301000 Sobic005G206000--Sobic010G268700 Sobic008G010500 Sobic008G010500 Sobic005G206000--Sobic008G010500 Sobic001G231800 Sobic001G231800 Sobic005G206000--Sobic001G231800 Sobic005G206000--Sobic005G177100 Sobic010G245400 Sobic010G245400 Sobic005G206000--Sobic010G245400 Sobic006G097900 Sobic006G097900 Sobic005G206000--Sobic006G097900 Sobic003G053600 Sobic003G053600 Sobic005G206000--Sobic003G053600 Sobic005G206000--Sobic004G002901 Sobic005G177100--Sobic005G206000 Sobic007G177400 Sobic007G177400 Sobic005G177100--Sobic007G177400 Sobic007G064500 Sobic007G064500 Sobic005G177100--Sobic007G064500 Sobic005G177100--Sobic008G010500 Sobic005G177100--Sobic001G231800 Sobic005G177100--Sobic004G346300 Sobic005G162400 Sobic005G162400 Sobic005G177100--Sobic005G162400 Sobic002G366200 Sobic002G366200 Sobic005G177100--Sobic002G366200 Sobic005G177100--Sobic010G245400 Sobic004G002901--Sobic005G060200 Sobic005G197500 Sobic005G197500 Sobic004G002901--Sobic005G197500 Sobic004G002901--Sobic010G268700 Sobic004G002901--Sobic004G346300 Sobic001G271300 Sobic001G271300 Sobic004G002901--Sobic001G271300 Sobic007G111800 Sobic007G111800 Sobic004G002901--Sobic007G111800 Sobic007G212000 Sobic007G212000 Sobic004G002901--Sobic007G212000 Sobic004G002901--Sobic010G245400 Sobic003G443700 Sobic003G443700 Sobic004G002901--Sobic003G443700 Sobic010G268700--Sobic006G097900 Sobic010G268700--Sobic005G060200 Sobic010G268700--Sobic001G301000 Sobic005G216600 Sobic005G216600 Sobic010G268700--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic010G268700--Sobic001G293100 Sobic010G268700--Sobic005G197500 Sobic010G268700--Sobic008G010500 Sobic010G268700--Sobic004G002901 Sobic003G161400 Sobic003G161400 Sobic010G268700--Sobic003G161400 Sobic010G013000--Sobic008G010500 Sobic007G186500 Sobic007G186500 Sobic010G013000--Sobic007G186500 Sobic004G003100 Sobic004G003100 Sobic010G013000--Sobic004G003100 Sobic010G013000--Sobic010G268700 Sobic010G013000--Sobic001G301000 Sobic010G013000--Sobic002G025500 Sobic002G028632 Sobic002G028632 Sobic010G013000--Sobic002G028632 Sobic003G357700 Sobic003G357700 Sobic010G013000--Sobic003G357700 Sobic010G013000--Sobic001G231800 Sobic004G346300--Sobic003G443700 Sobic004G346300--Sobic003G357700 Sobic005G216400 Sobic005G216400 Sobic004G346300--Sobic005G216400 Sobic004G346300--Sobic005G060200 Sobic004G346300--Sobic007G177400 Sobic004G346300--Sobic004G002901 Sobic004G346300--Sobic007G212000 Sobic003G023600 Sobic003G023600 Sobic004G346300--Sobic003G023600 Sobic004G346300--Sobic002G025500 Sobic005G220300--Sobic005G162400 Sobic002G178101 Sobic002G178101 Sobic005G220300--Sobic002G178101 Sobic002G178000 Sobic002G178000 Sobic005G220300--Sobic002G178000 Sobic005G220300--Sobic003G443700 Sobic005G220300--Sobic005G216400 Sobic005G220300--Sobic005G060200 Sobic005G220300--Sobic003G357700 Sobic005G220300--Sobic004G346300 Sobic006G121000 Sobic006G121000 Sobic005G220300--Sobic006G121000 Sobic005G060200--Sobic010G268700 Sobic005G060200--Sobic005G216400 Sobic005G060200--Sobic004G002901 Sobic005G060200--Sobic006G121000 Sobic005G060200--Sobic005G197500 Sobic005G060200--Sobic007G212000 Sobic005G060200--Sobic003G443700 Sobic005G060200--Sobic002G178101 Sobic007G015000 Sobic007G015000 Sobic005G060200--Sobic007G015000 Sobic002G025500--Sobic003G443700 Sobic002G025500--Sobic004G346300 Sobic002G025500--Sobic003G357700 Sobic002G025500--Sobic010G268700 Sobic002G025500--Sobic002G366200 Sobic002G025500--Sobic005G060200 Sobic002G025500--Sobic005G216400 Sobic002G025500--Sobic007G177400 Sobic002G025500--Sobic007G111800
Octagon: transcription factors


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