Gene annotation
Transcriptome id Sobic.002G237800.1,Sobic.002G237800.2
Synonym Sb02g027560
Functional annotation NOL1/NOP2/sun family protein, putative, expressed
UniProt C5X355
Pfam PF13847 PF01029
Panther DB PTHR22807 PTHR22807:SF30
NCBI CDD KOG1122; tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
KEGG Orthology K03500; rsmB, 16S rRNA (cytosine967-C5)-methyltransferase
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G13180 : NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
RAP-DB (Rice) LOC_Os09g30100.1 : NOL1/NOP2/sun family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014152
Brachypodium KQJ90649 , KQJ90648
Barley HORVU6Hr1G034260.1 , HORVU5Hr1G071070.3 , HORVU5Hr1G071070.1 , HORVU5Hr1G071070.6 , HORVU5Hr1G071070.7 , HORVU5Hr1G071070.4 , HORVU5Hr1G071070.5 , HORVU5Hr1G071070.8 , HORVU5Hr1G071070.9 , HORVU5Hr1G071070.10 , HORVU5Hr1G071070.11 , HORVU5Hr1G071070.12 , HORVU5Hr1G071070.13 , HORVU5Hr1G071070.14 , HORVU5Hr1G071070.15 , HORVU5Hr1G071070.16 , HORVU5Hr1G071070.17 , HORVU5Hr1G071070.18 , HORVU5Hr1G071070.19 , HORVU5Hr1G071070.25 , HORVU5Hr1G071070.24 , HORVU5Hr1G071070.27 , HORVU5Hr1G071070.26 , HORVU5Hr1G071070.20 , HORVU5Hr1G071070.23 , HORVU5Hr1G071070.22 , HORVU5Hr1G071070.29 , HORVU5Hr1G071070.28 , HORVU5Hr1G071070.33 , HORVU5Hr1G071070.30
Wheat TraesCS5B02G251800 , TraesCS5A02G253000 , TraesCS5D02G260700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343900 expressed protein -
2 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
3 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
4 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
5 Sobic.006G054300 amidohydrolase family protein, expressed -
6 Sobic.001G277400 expressed protein -
7 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.002G236500 OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed -
9 Sobic.005G008600 double-stranded RNA binding motif containing protein, expressed -
10 Sobic.003G162900 expressed protein -
11 Sobic.006G047300 Minichromosome maintenance (MCM2/3/5) family protein("PubMedID : 26759170,PubMedID : 24597475")@EMB1688, putative, expressed K06949: rsgA, ribosome biogenesis GTPase / thiamine phosphate phosphatase
12 Sobic.003G267500 expressed protein -
13 Sobic.004G065300 CR084 protein, putative, expressed -
14 Sobic.007G101500 "Bt2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659904)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
15 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
16 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
17 Sobic.003G271900 expressed protein -
18 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
19 Sobic.003G222500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
20 Sobic.009G089101 - -


Gene co-expression network
sample Sobic002G237800 Sobic002G237800 Sobic004G343900 Sobic004G343900 Sobic002G237800--Sobic004G343900 Sobic004G307400 Sobic004G307400 Sobic002G237800--Sobic004G307400 Sobic005G149400 Sobic005G149400 Sobic002G237800--Sobic005G149400 SobicK031800 SobicK031800 Sobic002G237800--SobicK031800 Sobic006G054300 Sobic006G054300 Sobic002G237800--Sobic006G054300 Sobic001G277400 Sobic001G277400 Sobic002G237800--Sobic001G277400 Sobic005G117300 Sobic005G117300 Sobic002G237800--Sobic005G117300 Sobic002G236500 Sobic002G236500 Sobic002G237800--Sobic002G236500 Sobic005G008600 Sobic005G008600 Sobic002G237800--Sobic005G008600 Sobic004G343900--Sobic004G307400 Sobic008G171300 Sobic008G171300 Sobic004G343900--Sobic008G171300 Sobic003G387100 Sobic003G387100 Sobic004G343900--Sobic003G387100 Sobic008G188600 Sobic008G188600 Sobic004G343900--Sobic008G188600 Sobic004G343900--Sobic005G149400 Sobic009G030900 Sobic009G030900 Sobic004G343900--Sobic009G030900 Sobic009G059300 Sobic009G059300 Sobic004G343900--Sobic009G059300 Sobic004G274100 Sobic004G274100 Sobic004G343900--Sobic004G274100 Sobic006G067400 Sobic006G067400 Sobic004G343900--Sobic006G067400 Sobic004G307400--Sobic005G149400 Sobic004G307400--Sobic004G343900 Sobic009G030800 Sobic009G030800 Sobic004G307400--Sobic009G030800 Sobic004G307400--Sobic003G387100 Sobic001G291900 Sobic001G291900 Sobic004G307400--Sobic001G291900 Sobic004G307400--SobicK031800 Sobic004G016400 Sobic004G016400 Sobic004G307400--Sobic004G016400 Sobic004G336000 Sobic004G336000 Sobic004G307400--Sobic004G336000 Sobic004G307400--Sobic009G030900 Sobic005G149400--Sobic004G307400 Sobic005G149400--Sobic004G336000 Sobic005G149400--Sobic004G016400 Sobic005G149400--SobicK031800 Sobic005G149400--Sobic003G387100 Sobic005G149400--Sobic009G030800 Sobic001G309300 Sobic001G309300 Sobic005G149400--Sobic001G309300 Sobic005G149400--Sobic009G059300 Sobic008G073100 Sobic008G073100 Sobic005G149400--Sobic008G073100 Sobic003G219200 Sobic003G219200 SobicK031800--Sobic003G219200 SobicK031800--Sobic008G188600 SobicK031800--Sobic003G387100 Sobic009G175500 Sobic009G175500 SobicK031800--Sobic009G175500 SobicK031800--Sobic005G149400 Sobic004G336200 Sobic004G336200 SobicK031800--Sobic004G336200 Sobic010G035400 Sobic010G035400 SobicK031800--Sobic010G035400 Sobic002G275300 Sobic002G275300 SobicK031800--Sobic002G275300 Sobic006G102000 Sobic006G102000 SobicK031800--Sobic006G102000 Sobic005G116100 Sobic005G116100 Sobic006G054300--Sobic005G116100 Sobic008G078400 Sobic008G078400 Sobic006G054300--Sobic008G078400 Sobic006G054300--Sobic009G030900 Sobic006G054300--Sobic004G343900 Sobic007G143700 Sobic007G143700 Sobic006G054300--Sobic007G143700 Sobic002G274200 Sobic002G274200 Sobic006G054300--Sobic002G274200 Sobic001G104800 Sobic001G104800 Sobic006G054300--Sobic001G104800 Sobic005G123200 Sobic005G123200 Sobic006G054300--Sobic005G123200 Sobic003G157400 Sobic003G157400 Sobic006G054300--Sobic003G157400 Sobic003G271900 Sobic003G271900 Sobic001G277400--Sobic003G271900 Sobic002G131700 Sobic002G131700 Sobic001G277400--Sobic002G131700 Sobic004G165000 Sobic004G165000 Sobic001G277400--Sobic004G165000 Sobic010G035200 Sobic010G035200 Sobic001G277400--Sobic010G035200 Sobic003G084500 Sobic003G084500 Sobic001G277400--Sobic003G084500 Sobic002G181000 Sobic002G181000 Sobic001G277400--Sobic002G181000 Sobic005G002900 Sobic005G002900 Sobic001G277400--Sobic005G002900 Sobic003G444500 Sobic003G444500 Sobic001G277400--Sobic003G444500 Sobic004G065300 Sobic004G065300 Sobic001G277400--Sobic004G065300 Sobic004G003900 Sobic004G003900 Sobic005G117300--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic005G117300--Sobic009G092900 Sobic009G085200 Sobic009G085200 Sobic005G117300--Sobic009G085200 Sobic001G025800 Sobic001G025800 Sobic005G117300--Sobic001G025800 Sobic008G090900 Sobic008G090900 Sobic005G117300--Sobic008G090900 Sobic005G117300--Sobic004G065300 Sobic001G346600 Sobic001G346600 Sobic005G117300--Sobic001G346600 Sobic001G495200 Sobic001G495200 Sobic005G117300--Sobic001G495200 Sobic007G208300 Sobic007G208300 Sobic005G117300--Sobic007G208300 Sobic003G388000 Sobic003G388000 Sobic002G236500--Sobic003G388000 Sobic002G128101 Sobic002G128101 Sobic002G236500--Sobic002G128101 Sobic003G396700 Sobic003G396700 Sobic002G236500--Sobic003G396700 Sobic002G236500--Sobic002G237800 Sobic001G200200 Sobic001G200200 Sobic002G236500--Sobic001G200200 Sobic001G273000 Sobic001G273000 Sobic002G236500--Sobic001G273000 Sobic002G236500--Sobic005G008600 Sobic004G030400 Sobic004G030400 Sobic002G236500--Sobic004G030400 Sobic005G150600 Sobic005G150600 Sobic002G236500--Sobic005G150600 Sobic005G008600--Sobic002G236500 Sobic005G008600--Sobic002G237800 Sobic005G008600--Sobic003G388000 Sobic010G089800 Sobic010G089800 Sobic005G008600--Sobic010G089800 Sobic002G340200 Sobic002G340200 Sobic005G008600--Sobic002G340200 Sobic003G433200 Sobic003G433200 Sobic005G008600--Sobic003G433200 Sobic004G267900 Sobic004G267900 Sobic005G008600--Sobic004G267900 Sobic007G075800 Sobic007G075800 Sobic005G008600--Sobic007G075800 Sobic001G340000 Sobic001G340000 Sobic005G008600--Sobic001G340000
Octagon: transcription factors


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