Gene annotation
Transcriptome id Sobic.002G277800.1
Synonym Sb02g031080, RHA3A
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X6U1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G17450 : RING-H2 finger A3A
RAP-DB (Rice) LOC_Os09g36500.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047819
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G348300 expressed protein -
2 Sobic.002G195500 Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed -
3 Sobic.002G053700 auxin-induced protein 5NG4, putative, expressed -
4 Sobic.001G301300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
5 Sobic.009G076300 expressed protein -
6 Sobic.002G018300 expressed protein -
7 Sobic.004G009400 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
8 Sobic.003G266200 expressed protein -
9 Sobic.001G348500 expressed protein -
10 Sobic.010G234400 O-methyltransferase, putative, expressed -
11 Sobic.010G003600 LTPL127 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.001G378400 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
14 Sobic.007G025000 expressed protein -
15 Sobic.005G202200 integral membrane protein, putative, expressed -
16 Sobic.005G063400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
17 Sobic.001G378700 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
18 Sobic.009G199100 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
19 Sobic.001G506750 - -
20 Sobic.005G068900 OsWAK92 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic002G277800 Sobic002G277800 Sobic001G348300 Sobic001G348300 Sobic002G277800--Sobic001G348300 Sobic002G195500 Sobic002G195500 Sobic002G277800--Sobic002G195500 Sobic002G053700 Sobic002G053700 Sobic002G277800--Sobic002G053700 Sobic001G301300 Sobic001G301300 Sobic002G277800--Sobic001G301300 Sobic009G076300 Sobic009G076300 Sobic002G277800--Sobic009G076300 Sobic002G018300 Sobic002G018300 Sobic002G277800--Sobic002G018300 Sobic004G009400 Sobic004G009400 Sobic002G277800--Sobic004G009400 Sobic003G266200 Sobic003G266200 Sobic002G277800--Sobic003G266200 Sobic001G348500 Sobic001G348500 Sobic002G277800--Sobic001G348500 Sobic001G348300--Sobic002G053700 Sobic001G176300 Sobic001G176300 Sobic001G348300--Sobic001G176300 Sobic001G348300--Sobic001G348500 Sobic001G039200 Sobic001G039200 Sobic001G348300--Sobic001G039200 Sobic005G063400 Sobic005G063400 Sobic001G348300--Sobic005G063400 Sobic002G425000 Sobic002G425000 Sobic001G348300--Sobic002G425000 Sobic010G161800 Sobic010G161800 Sobic001G348300--Sobic010G161800 Sobic001G340400 Sobic001G340400 Sobic001G348300--Sobic001G340400 Sobic006G122800 Sobic006G122800 Sobic001G348300--Sobic006G122800 Sobic002G150100 Sobic002G150100 Sobic002G195500--Sobic002G150100 Sobic003G344050 Sobic003G344050 Sobic002G195500--Sobic003G344050 Sobic002G220800 Sobic002G220800 Sobic002G195500--Sobic002G220800 Sobic007G108200 Sobic007G108200 Sobic002G195500--Sobic007G108200 Sobic003G249050 Sobic003G249050 Sobic002G195500--Sobic003G249050 Sobic004G061701 Sobic004G061701 Sobic002G195500--Sobic004G061701 Sobic008G039501 Sobic008G039501 Sobic002G195500--Sobic008G039501 Sobic006G277700 Sobic006G277700 Sobic002G053700--Sobic006G277700 Sobic002G053700--Sobic005G063400 Sobic003G053600 Sobic003G053600 Sobic002G053700--Sobic003G053600 Sobic001G379400 Sobic001G379400 Sobic002G053700--Sobic001G379400 Sobic002G053700--Sobic006G122800 Sobic002G053700--Sobic001G301300 Sobic006G174300 Sobic006G174300 Sobic002G053700--Sobic006G174300 Sobic002G050300 Sobic002G050300 Sobic002G053700--Sobic002G050300 Sobic002G053700--Sobic004G009400 Sobic001G301300--Sobic002G053700 Sobic001G238200 Sobic001G238200 Sobic001G301300--Sobic001G238200 Sobic001G058300 Sobic001G058300 Sobic001G301300--Sobic001G058300 Sobic001G301300--Sobic005G063400 Sobic002G377700 Sobic002G377700 Sobic001G301300--Sobic002G377700 Sobic006G172601 Sobic006G172601 Sobic001G301300--Sobic006G172601 Sobic001G238300 Sobic001G238300 Sobic001G301300--Sobic001G238300 Sobic001G301300--Sobic006G122800 Sobic007G057400 Sobic007G057400 Sobic001G301300--Sobic007G057400 Sobic004G008300 Sobic004G008300 Sobic009G076300--Sobic004G008300 Sobic003G204300 Sobic003G204300 Sobic009G076300--Sobic003G204300 Sobic003G204400 Sobic003G204400 Sobic009G076300--Sobic003G204400 Sobic009G004950 Sobic009G004950 Sobic009G076300--Sobic009G004950 Sobic007G066508 Sobic007G066508 Sobic009G076300--Sobic007G066508 Sobic005G220300 Sobic005G220300 Sobic009G076300--Sobic005G220300 Sobic002G009100 Sobic002G009100 Sobic009G076300--Sobic002G009100 Sobic009G142800 Sobic009G142800 Sobic002G018300--Sobic009G142800 Sobic004G238100 Sobic004G238100 Sobic002G018300--Sobic004G238100 Sobic001G269900 Sobic001G269900 Sobic002G018300--Sobic001G269900 Sobic006G191100 Sobic006G191100 Sobic002G018300--Sobic006G191100 Sobic010G165500 Sobic010G165500 Sobic002G018300--Sobic010G165500 Sobic005G050300 Sobic005G050300 Sobic002G018300--Sobic005G050300 Sobic006G271500 Sobic006G271500 Sobic002G018300--Sobic006G271500 Sobic007G054500 Sobic007G054500 Sobic002G018300--Sobic007G054500 Sobic010G165200 Sobic010G165200 Sobic002G018300--Sobic010G165200 Sobic004G009400--Sobic005G063400 Sobic004G009400--Sobic003G053600 Sobic004G009400--Sobic002G053700 Sobic004G009400--Sobic007G057400 Sobic004G009400--Sobic006G277700 Sobic007G015200 Sobic007G015200 Sobic004G009400--Sobic007G015200 Sobic003G322100 Sobic003G322100 Sobic004G009400--Sobic003G322100 Sobic005G066432 Sobic005G066432 Sobic004G009400--Sobic005G066432 Sobic001G360500 Sobic001G360500 Sobic004G009400--Sobic001G360500 Sobic010G003600 Sobic010G003600 Sobic003G266200--Sobic010G003600 Sobic007G114301 Sobic007G114301 Sobic003G266200--Sobic007G114301 Sobic003G266200--Sobic005G066432 Sobic008G187700 Sobic008G187700 Sobic003G266200--Sobic008G187700 Sobic003G266200--Sobic001G348300 Sobic003G348600 Sobic003G348600 Sobic003G266200--Sobic003G348600 Sobic003G266200--Sobic001G301300 Sobic005G217300 Sobic005G217300 Sobic003G266200--Sobic005G217300 Sobic003G266200--Sobic001G348500 Sobic001G348500--Sobic001G348300 Sobic002G183600 Sobic002G183600 Sobic001G348500--Sobic002G183600 Sobic005G005600 Sobic005G005600 Sobic001G348500--Sobic005G005600 Sobic001G348500--Sobic001G176300 Sobic001G238400 Sobic001G238400 Sobic001G348500--Sobic001G238400 Sobic009G217700 Sobic009G217700 Sobic001G348500--Sobic009G217700 Sobic001G449600 Sobic001G449600 Sobic001G348500--Sobic001G449600 Sobic005G213500 Sobic005G213500 Sobic001G348500--Sobic005G213500 Sobic008G157800 Sobic008G157800 Sobic001G348500--Sobic008G157800
Octagon: transcription factors


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