Gene annotation
Transcriptome id Sobic.002G332400.1
Synonym Sb02g035860
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XAW1
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF332
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46870 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g36450.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014866
Brachypodium KQK15842
Barley HORVU0Hr1G003330.1 , HORVU2Hr1G042720.1
Wheat TraesCS2B02G237500 , TraesCS2A02G212300 , TraesCS2D02G218200
Populus -


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cDNA sequences
Sobic.002G332400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
2 Sobic.009G243100 pex14, putative, expressed -
3 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
4 Sobic.002G109600 tic22-like family domain containing protein, expressed -
5 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
6 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
7 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
8 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
9 Sobic.001G120500 toc64, putative, expressed -
10 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
11 Sobic.007G209800 3-oxoacyl-reductase, chloroplast precursor, putative, expressed -
12 Sobic.004G359100 expressed protein -
13 Sobic.007G102700 - -
14 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
15 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
16 Sobic.004G235300 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
18 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
19 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein


Gene co-expression network
sample Sobic002G332400 Sobic002G332400 Sobic004G268100 Sobic004G268100 Sobic002G332400--Sobic004G268100 Sobic009G243100 Sobic009G243100 Sobic002G332400--Sobic009G243100 Sobic001G244300 Sobic001G244300 Sobic002G332400--Sobic001G244300 Sobic002G109600 Sobic002G109600 Sobic002G332400--Sobic002G109600 Sobic009G029700 Sobic009G029700 Sobic002G332400--Sobic009G029700 Sobic001G202500 Sobic001G202500 Sobic002G332400--Sobic001G202500 Sobic010G228700 Sobic010G228700 Sobic002G332400--Sobic010G228700 Sobic005G172500 Sobic005G172500 Sobic002G332400--Sobic005G172500 Sobic001G120500 Sobic001G120500 Sobic002G332400--Sobic001G120500 Sobic004G268100--Sobic009G029700 Sobic004G268100--Sobic002G332400 Sobic009G124000 Sobic009G124000 Sobic004G268100--Sobic009G124000 Sobic002G238000 Sobic002G238000 Sobic004G268100--Sobic002G238000 Sobic001G437200 Sobic001G437200 Sobic004G268100--Sobic001G437200 Sobic003G310100 Sobic003G310100 Sobic004G268100--Sobic003G310100 Sobic006G170200 Sobic006G170200 Sobic004G268100--Sobic006G170200 Sobic004G214400 Sobic004G214400 Sobic004G268100--Sobic004G214400 Sobic001G375000 Sobic001G375000 Sobic004G268100--Sobic001G375000 Sobic001G296900 Sobic001G296900 Sobic009G243100--Sobic001G296900 Sobic010G049100 Sobic010G049100 Sobic009G243100--Sobic010G049100 Sobic002G111200 Sobic002G111200 Sobic009G243100--Sobic002G111200 Sobic009G243100--Sobic002G332400 Sobic002G071000 Sobic002G071000 Sobic009G243100--Sobic002G071000 Sobic002G039000 Sobic002G039000 Sobic009G243100--Sobic002G039000 Sobic009G004600 Sobic009G004600 Sobic009G243100--Sobic009G004600 Sobic002G364800 Sobic002G364800 Sobic009G243100--Sobic002G364800 Sobic003G422900 Sobic003G422900 Sobic009G243100--Sobic003G422900 Sobic001G244300--Sobic001G120500 Sobic008G063300 Sobic008G063300 Sobic001G244300--Sobic008G063300 Sobic001G407700 Sobic001G407700 Sobic001G244300--Sobic001G407700 Sobic001G244300--Sobic005G172500 Sobic009G056200 Sobic009G056200 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G058200 Sobic001G058200 Sobic001G244300--Sobic001G058200 Sobic004G156800 Sobic004G156800 Sobic001G244300--Sobic004G156800 Sobic001G401500 Sobic001G401500 Sobic001G244300--Sobic001G401500 Sobic002G109600--Sobic005G172500 Sobic001G275300 Sobic001G275300 Sobic002G109600--Sobic001G275300 Sobic004G340400 Sobic004G340400 Sobic002G109600--Sobic004G340400 Sobic001G153300 Sobic001G153300 Sobic002G109600--Sobic001G153300 Sobic002G109600--Sobic001G244300 Sobic002G109600--Sobic001G401500 Sobic006G088200 Sobic006G088200 Sobic002G109600--Sobic006G088200 Sobic004G359100 Sobic004G359100 Sobic002G109600--Sobic004G359100 Sobic002G009200 Sobic002G009200 Sobic002G109600--Sobic002G009200 Sobic001G380500 Sobic001G380500 Sobic009G029700--Sobic001G380500 Sobic009G029700--Sobic004G268100 Sobic007G029100 Sobic007G029100 Sobic009G029700--Sobic007G029100 Sobic004G117800 Sobic004G117800 Sobic009G029700--Sobic004G117800 Sobic009G029700--Sobic001G437200 Sobic009G029700--Sobic002G039000 Sobic009G029700--Sobic003G310100 Sobic002G281800 Sobic002G281800 Sobic009G029700--Sobic002G281800 Sobic009G029700--Sobic001G202500 Sobic004G297500 Sobic004G297500 Sobic001G202500--Sobic004G297500 Sobic001G161400 Sobic001G161400 Sobic001G202500--Sobic001G161400 Sobic001G202500--Sobic009G029700 Sobic001G341800 Sobic001G341800 Sobic001G202500--Sobic001G341800 Sobic003G283800 Sobic003G283800 Sobic001G202500--Sobic003G283800 Sobic001G202500--Sobic003G310100 Sobic001G202500--Sobic001G437200 Sobic002G404200 Sobic002G404200 Sobic001G202500--Sobic002G404200 Sobic001G202500--Sobic004G268100 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic001G120500--Sobic005G172500 Sobic001G120500--Sobic001G244300 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500
Octagon: transcription factors


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