Gene annotation
Transcriptome id Sobic.002G109600.1
Synonym Sb02g009350
Functional annotation tic22-like family domain containing protein, expressed
UniProt C5X3P1
Pfam PF04278
Panther DB PTHR33926 PTHR33926:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23710 : Tic22-like family protein
RAP-DB (Rice) LOC_Os07g19030.1 : tic22-like family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045634
Brachypodium KQJ89727
Barley -
Wheat TraesCS3A02G290700 , TraesCS3D02G290500
Populus -


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cDNA sequences
Sobic.002G109600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
2 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
3 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
4 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
5 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
6 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
7 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
8 Sobic.004G359100 expressed protein -
9 Sobic.002G009200 - K15456: protein KTI12
10 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
11 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
12 Sobic.001G178300 DNA-binding protein, putative, expressed -
13 Sobic.008G088875 - -
14 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
15 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
16 Sobic.010G102600 pentatricopeptide, putative, expressed -
17 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
18 Sobic.001G120500 toc64, putative, expressed -
19 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
20 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T


Gene co-expression network
sample Sobic002G109600 Sobic002G109600 Sobic005G172500 Sobic005G172500 Sobic002G109600--Sobic005G172500 Sobic001G275300 Sobic001G275300 Sobic002G109600--Sobic001G275300 Sobic004G340400 Sobic004G340400 Sobic002G109600--Sobic004G340400 Sobic001G153300 Sobic001G153300 Sobic002G109600--Sobic001G153300 Sobic001G244300 Sobic001G244300 Sobic002G109600--Sobic001G244300 Sobic001G401500 Sobic001G401500 Sobic002G109600--Sobic001G401500 Sobic006G088200 Sobic006G088200 Sobic002G109600--Sobic006G088200 Sobic004G359100 Sobic004G359100 Sobic002G109600--Sobic004G359100 Sobic002G009200 Sobic002G009200 Sobic002G109600--Sobic002G009200 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic009G056200 Sobic009G056200 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic001G145400 Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic008G038600 Sobic008G038600 Sobic001G153300--Sobic008G038600 Sobic006G269800 Sobic006G269800 Sobic001G153300--Sobic006G269800 Sobic010G204900 Sobic010G204900 Sobic001G153300--Sobic010G204900 Sobic002G155000 Sobic002G155000 Sobic001G153300--Sobic002G155000 Sobic007G030800 Sobic007G030800 Sobic001G153300--Sobic007G030800 Sobic001G025800 Sobic001G025800 Sobic001G153300--Sobic001G025800 Sobic004G344000 Sobic004G344000 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic001G153300--Sobic002G109600 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic008G063300 Sobic008G063300 Sobic001G244300--Sobic008G063300 Sobic001G407700 Sobic001G407700 Sobic001G244300--Sobic001G407700 Sobic001G244300--Sobic005G172500 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G244300--Sobic001G058200 Sobic004G156800 Sobic004G156800 Sobic001G244300--Sobic004G156800 Sobic001G244300--Sobic001G401500 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic006G086600 Sobic006G086600 Sobic001G401500--Sobic006G086600 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic006G088200--Sobic001G227400 Sobic002G343400 Sobic002G343400 Sobic004G359100--Sobic002G343400 Sobic002G431300 Sobic002G431300 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G238900 Sobic004G238900 Sobic004G359100--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic004G359100--Sobic003G067100 Sobic010G255100 Sobic010G255100 Sobic004G359100--Sobic010G255100 Sobic003G083400 Sobic003G083400 Sobic004G359100--Sobic003G083400 Sobic001G375000 Sobic001G375000 Sobic004G359100--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic004G359100--Sobic006G088000 Sobic008G051200 Sobic008G051200 Sobic002G009200--Sobic008G051200 Sobic001G114500 Sobic001G114500 Sobic002G009200--Sobic001G114500 Sobic001G251100 Sobic001G251100 Sobic002G009200--Sobic001G251100 Sobic001G003500 Sobic001G003500 Sobic002G009200--Sobic001G003500 Sobic007G084100 Sobic007G084100 Sobic002G009200--Sobic007G084100 Sobic006G010000 Sobic006G010000 Sobic002G009200--Sobic006G010000 Sobic003G293300 Sobic003G293300 Sobic002G009200--Sobic003G293300 Sobic004G030800 Sobic004G030800 Sobic002G009200--Sobic004G030800 Sobic002G009200--Sobic001G259000
Octagon: transcription factors


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