Gene annotation
Transcriptome id Sobic.002G350500.1
Synonym RAP2.11
Functional annotation AP2 domain containing protein, expressed
UniProt C5XCA9
Pfam PF00847
Panther DB PTHR31194 PTHR31194:SF0
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G19790 : related to AP2 11
RAP-DB (Rice) LOC_Os07g38750.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048480 , Zm00025a014974
Brachypodium KQK15572
Barley HORVU2Hr1G037540.2 , HORVU2Hr1G037540.1 , HORVU5Hr1G018720.1 , HORVU6Hr1G090800.2 , HORVU6Hr1G090800.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G137800 expressed protein -
2 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
3 Sobic.010G156500 expressed protein -
4 Sobic.004G203700 ubiquitin family protein, putative, expressed -
5 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
6 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
7 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
8 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
9 Sobic.003G027400 VQ domain containing protein, putative, expressed -
10 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
12 Sobic.001G279500 VQ domain containing protein, putative, expressed -
13 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
14 Sobic.003G382600 ARGOS, putative, expressed -
15 Sobic.003G321200 pectinesterase, putative, expressed K01051: pectinesterase
16 Sobic.009G231000 - -
17 Sobic.001G477600 zinc finger protein, putative, expressed -
18 Sobic.002G034800 - -
19 Sobic.010G221300 expressed protein -
20 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase


Gene co-expression network
sample Sobic002G350500 Sobic002G350500 Sobic006G137800 Sobic006G137800 Sobic002G350500--Sobic006G137800 Sobic003G364300 Sobic003G364300 Sobic002G350500--Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic002G350500--Sobic010G156500 Sobic004G203700 Sobic004G203700 Sobic002G350500--Sobic004G203700 Sobic009G159400 Sobic009G159400 Sobic002G350500--Sobic009G159400 Sobic001G435000 Sobic001G435000 Sobic002G350500--Sobic001G435000 Sobic002G389400 Sobic002G389400 Sobic002G350500--Sobic002G389400 Sobic001G529400 Sobic001G529400 Sobic002G350500--Sobic001G529400 Sobic003G027400 Sobic003G027400 Sobic002G350500--Sobic003G027400 Sobic006G137800--Sobic009G159400 Sobic008G025600 Sobic008G025600 Sobic006G137800--Sobic008G025600 Sobic004G321300 Sobic004G321300 Sobic006G137800--Sobic004G321300 Sobic001G140900 Sobic001G140900 Sobic006G137800--Sobic001G140900 Sobic002G200600 Sobic002G200600 Sobic006G137800--Sobic002G200600 Sobic001G038900 Sobic001G038900 Sobic006G137800--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic006G137800--Sobic008G050600 Sobic006G159600 Sobic006G159600 Sobic006G137800--Sobic006G159600 Sobic003G345100 Sobic003G345100 Sobic006G137800--Sobic003G345100 Sobic003G364300--Sobic010G156500 Sobic009G231000 Sobic009G231000 Sobic003G364300--Sobic009G231000 Sobic002G338500 Sobic002G338500 Sobic003G364300--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic003G364300--Sobic003G364000 Sobic007G008100 Sobic007G008100 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic002G302500 Sobic002G302500 Sobic003G364300--Sobic002G302500 Sobic010G156500--Sobic003G364300 Sobic010G156500--Sobic002G338500 Sobic010G156500--Sobic003G364000 Sobic010G156500--Sobic003G382600 Sobic005G213500 Sobic005G213500 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic010G156500--Sobic009G231000 Sobic003G303100 Sobic003G303100 Sobic004G203700--Sobic003G303100 Sobic002G055700 Sobic002G055700 Sobic004G203700--Sobic002G055700 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic003G426400 Sobic003G426400 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic004G203700--Sobic003G382600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600 Sobic009G159400--Sobic001G038900 Sobic009G159400--Sobic001G435000 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic009G159400--Sobic001G140900 Sobic009G159400--Sobic008G050600 Sobic010G259600 Sobic010G259600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic001G435000--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic001G435000--Sobic004G229800 Sobic001G435000--Sobic009G159400 Sobic007G155000 Sobic007G155000 Sobic001G435000--Sobic007G155000 Sobic001G435000--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic001G435000--Sobic005G063100 Sobic005G099000 Sobic005G099000 Sobic001G435000--Sobic005G099000 Sobic001G435000--Sobic008G050600 Sobic001G435000--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic002G389400--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic003G367200 Sobic003G367200 Sobic002G389400--Sobic003G367200 Sobic002G389400--Sobic004G321300 Sobic010G225251 Sobic010G225251 Sobic002G389400--Sobic010G225251 Sobic004G336500 Sobic004G336500 Sobic002G389400--Sobic004G336500 Sobic010G166500 Sobic010G166500 Sobic002G389400--Sobic010G166500 Sobic001G138600 Sobic001G138600 Sobic002G389400--Sobic001G138600 Sobic001G313200 Sobic001G313200 Sobic001G529400--Sobic001G313200 Sobic010G047100 Sobic010G047100 Sobic001G529400--Sobic010G047100 Sobic006G191800 Sobic006G191800 Sobic001G529400--Sobic006G191800 Sobic009G015900 Sobic009G015900 Sobic001G529400--Sobic009G015900 Sobic003G347900 Sobic003G347900 Sobic001G529400--Sobic003G347900 Sobic010G221300 Sobic010G221300 Sobic001G529400--Sobic010G221300 Sobic003G078200 Sobic003G078200 Sobic001G529400--Sobic003G078200 Sobic001G529400--Sobic006G137800 Sobic003G057100 Sobic003G057100 Sobic001G529400--Sobic003G057100 Sobic003G160700 Sobic003G160700 Sobic003G027400--Sobic003G160700 Sobic006G249300 Sobic006G249300 Sobic003G027400--Sobic006G249300 Sobic009G248100 Sobic009G248100 Sobic003G027400--Sobic009G248100 Sobic003G027400--Sobic010G221300 Sobic001G481000 Sobic001G481000 Sobic003G027400--Sobic001G481000 Sobic005G113300 Sobic005G113300 Sobic003G027400--Sobic005G113300 Sobic002G387900 Sobic002G387900 Sobic003G027400--Sobic002G387900 Sobic003G084400 Sobic003G084400 Sobic003G027400--Sobic003G084400 Sobic003G027400--Sobic002G200600
Octagon: transcription factors


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