Gene annotation
Transcriptome id Sobic.002G375900.3,Sobic.002G375900.4,Sobic.002G375900.2,Sobic.002G375900.1,Sobic.002G375900.5
Synonym Sb02g039350, GPDL2, MRH5, SHV3
Functional annotation glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5X2E4 , A0A1W0W7G2 , A0A1B6QFK5
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF24
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT4G26690 : PLC-like phosphodiesterase family protein,SHV3-like 1
RAP-DB (Rice) LOC_Os08g39350.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048767 , Zm00025a033785 , Zm00025a005043
Brachypodium KQJ98891
Barley -
Wheat TraesCS7D02G242500 , TraesCS7D02G242500 , TraesCS7B02G147500
Populus -


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cDNA sequences
Sobic.002G375900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
3 Sobic.002G054400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
5 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
6 Sobic.005G045700 PHD-finger family protein, expressed -
7 Sobic.002G366300 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.006G226000 expressed protein -
10 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.010G186300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.003G140800 expressed protein -
14 Sobic.006G262501 - -
15 Sobic.009G155800 expressed protein -
16 Sobic.006G172000 pectinesterase, putative, expressed -
17 Sobic.008G178566 - -
18 Sobic.002G297000 MOSC domain-containing protein, mitochondrial precursor, putative, expressed -
19 Sobic.010G037901 - -
20 Sobic.008G063600 glycosyl hydrolase family protein 27, putative, expressed -


Gene co-expression network
sample Sobic002G375900 Sobic002G375900 Sobic006G135800 Sobic006G135800 Sobic002G375900--Sobic006G135800 Sobic008G052300 Sobic008G052300 Sobic002G375900--Sobic008G052300 Sobic002G054400 Sobic002G054400 Sobic002G375900--Sobic002G054400 Sobic003G251700 Sobic003G251700 Sobic002G375900--Sobic003G251700 Sobic004G269100 Sobic004G269100 Sobic002G375900--Sobic004G269100 Sobic005G045700 Sobic005G045700 Sobic002G375900--Sobic005G045700 Sobic002G366300 Sobic002G366300 Sobic002G375900--Sobic002G366300 Sobic007G192200 Sobic007G192200 Sobic002G375900--Sobic007G192200 Sobic006G226000 Sobic006G226000 Sobic002G375900--Sobic006G226000 Sobic001G493100 Sobic001G493100 Sobic006G135800--Sobic001G493100 Sobic010G037901 Sobic010G037901 Sobic006G135800--Sobic010G037901 Sobic006G135800--Sobic006G226000 Sobic006G172000 Sobic006G172000 Sobic006G135800--Sobic006G172000 Sobic009G002200 Sobic009G002200 Sobic006G135800--Sobic009G002200 Sobic005G153000 Sobic005G153000 Sobic006G135800--Sobic005G153000 Sobic006G135800--Sobic007G192200 Sobic009G031800 Sobic009G031800 Sobic006G135800--Sobic009G031800 Sobic007G160400 Sobic007G160400 Sobic006G135800--Sobic007G160400 Sobic008G052300--Sobic004G269100 Sobic003G104100 Sobic003G104100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic005G163400 Sobic005G163400 Sobic008G052300--Sobic005G163400 Sobic002G259200 Sobic002G259200 Sobic008G052300--Sobic002G259200 Sobic006G016700 Sobic006G016700 Sobic008G052300--Sobic006G016700 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500 Sobic002G054400--Sobic005G045700 Sobic008G191850 Sobic008G191850 Sobic002G054400--Sobic008G191850 Sobic002G054400--Sobic002G366300 Sobic009G012600 Sobic009G012600 Sobic002G054400--Sobic009G012600 Sobic008G165300 Sobic008G165300 Sobic002G054400--Sobic008G165300 Sobic004G123200 Sobic004G123200 Sobic002G054400--Sobic004G123200 Sobic002G266300 Sobic002G266300 Sobic002G054400--Sobic002G266300 Sobic004G290100 Sobic004G290100 Sobic002G054400--Sobic004G290100 Sobic008G178566 Sobic008G178566 Sobic002G054400--Sobic008G178566 Sobic003G251700--Sobic006G172000 Sobic003G251700--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic003G251700--Sobic004G215100 Sobic003G251700--Sobic001G493100 Sobic003G251700--Sobic006G135800 Sobic003G251700--Sobic002G259200 Sobic003G251700--Sobic006G226000 Sobic005G092700 Sobic005G092700 Sobic003G251700--Sobic005G092700 Sobic006G041700 Sobic006G041700 Sobic003G251700--Sobic006G041700 Sobic004G269100--Sobic008G052300 Sobic004G269100--Sobic002G259200 Sobic004G269100--Sobic003G251700 Sobic004G269100--Sobic005G092700 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic002G127900 Sobic002G127900 Sobic005G045700--Sobic002G127900 Sobic007G053100 Sobic007G053100 Sobic005G045700--Sobic007G053100 Sobic005G045700--Sobic002G266300 Sobic005G045700--Sobic002G054400 Sobic003G368901 Sobic003G368901 Sobic005G045700--Sobic003G368901 Sobic001G125300 Sobic001G125300 Sobic005G045700--Sobic001G125300 Sobic005G045700--Sobic009G012600 Sobic005G045700--Sobic008G191850 Sobic006G262501 Sobic006G262501 Sobic005G045700--Sobic006G262501 Sobic010G179300 Sobic010G179300 Sobic002G366300--Sobic010G179300 Sobic001G125400 Sobic001G125400 Sobic002G366300--Sobic001G125400 Sobic005G147600 Sobic005G147600 Sobic002G366300--Sobic005G147600 Sobic007G025600 Sobic007G025600 Sobic002G366300--Sobic007G025600 Sobic006G083900 Sobic006G083900 Sobic002G366300--Sobic006G083900 Sobic006G167700 Sobic006G167700 Sobic002G366300--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic002G366300--Sobic009G103800 Sobic002G184700 Sobic002G184700 Sobic002G366300--Sobic002G184700 Sobic001G534200 Sobic001G534200 Sobic002G366300--Sobic001G534200 Sobic005G036200 Sobic005G036200 Sobic007G192200--Sobic005G036200 Sobic007G192200--Sobic006G135800 Sobic003G140800 Sobic003G140800 Sobic007G192200--Sobic003G140800 Sobic007G192200--Sobic009G002200 Sobic007G192200--Sobic006G226000 Sobic007G192200--Sobic009G012600 Sobic004G242200 Sobic004G242200 Sobic007G192200--Sobic004G242200 Sobic005G102800 Sobic005G102800 Sobic007G192200--Sobic005G102800 Sobic007G192200--Sobic009G031800 Sobic006G226000--Sobic009G031800 Sobic006G226000--Sobic007G160400 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic006G226000--Sobic004G123200 Sobic003G086800 Sobic003G086800 Sobic006G226000--Sobic003G086800 Sobic002G240000 Sobic002G240000 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400
Octagon: transcription factors


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