Gene annotation
Transcriptome id Sobic.003G003800.1
Synonym Sb03g000530, auxin response factor, SbARF3, ARF9
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor 1, putative, expressed
UniProt C5XJJ7
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G46530 : auxin response factor 11
RAP-DB (Rice) LOC_Os01g13520.1 : auxin response factor 1, putative, expressed
MaizeGDB (Corn) Zm00025a022794
Brachypodium PNT70228 , KQK03479 , KQK03480 , KQK03481
Barley HORVU3Hr1G032230.20 , HORVU3Hr1G032230.19 , HORVU3Hr1G032230.18 , HORVU3Hr1G032230.13 , HORVU3Hr1G032230.12 , HORVU3Hr1G032230.11 , HORVU3Hr1G032230.16 , HORVU3Hr1G032230.15 , HORVU3Hr1G032230.14 , HORVU3Hr1G032230.9 , HORVU3Hr1G032230.8 , HORVU3Hr1G032230.3 , HORVU3Hr1G032230.2 , HORVU3Hr1G032230.1 , HORVU3Hr1G032230.7 , HORVU3Hr1G032230.6 , HORVU3Hr1G032230.5 , HORVU3Hr1G032230.4
Wheat TraesCS3A02G159200 , TraesCS3D02G166700 , TraesCS3B02G190100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G263200 expressed protein -
2 Sobic.002G296600 cell cycle control protein, putative, expressed -
3 Sobic.010G112200 eukaryotic aspartyl protease domain containing protein, expressed -
4 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
5 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
6 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
8 Sobic.003G101000 phosphate transporter 1, putative, expressed -
9 Sobic.003G236701 - -
10 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
11 Sobic.004G147800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl isomerase, putative, expressed -
12 Sobic.006G209300 transferase family domain containing protein, expressed -
13 Sobic.002G120300 flavin monooxygenase, putative, expressed K11816: indole-3-pyruvate monooxygenase
14 Sobic.006G000600 expressed protein -
15 Sobic.006G066500 expressed protein -
16 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
17 Sobic.003G376400 expressed protein -
18 Sobic.005G014300 expressed protein -
19 Sobic.001G278000 - -
20 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G003800 Sobic003G003800 Sobic006G263200 Sobic006G263200 Sobic003G003800--Sobic006G263200 Sobic002G296600 Sobic002G296600 Sobic003G003800--Sobic002G296600 Sobic010G112200 Sobic010G112200 Sobic003G003800--Sobic010G112200 Sobic006G226200 Sobic006G226200 Sobic003G003800--Sobic006G226200 Sobic003G231500 Sobic003G231500 Sobic003G003800--Sobic003G231500 Sobic010G232500 Sobic010G232500 Sobic003G003800--Sobic010G232500 Sobic007G223600 Sobic007G223600 Sobic003G003800--Sobic007G223600 Sobic003G101000 Sobic003G101000 Sobic003G003800--Sobic003G101000 Sobic003G236701 Sobic003G236701 Sobic003G003800--Sobic003G236701 Sobic010G255700 Sobic010G255700 Sobic006G263200--Sobic010G255700 Sobic008G147300 Sobic008G147300 Sobic006G263200--Sobic008G147300 Sobic001G067200 Sobic001G067200 Sobic006G263200--Sobic001G067200 Sobic002G233900 Sobic002G233900 Sobic006G263200--Sobic002G233900 Sobic006G262400 Sobic006G262400 Sobic006G263200--Sobic006G262400 Sobic001G203400 Sobic001G203400 Sobic006G263200--Sobic001G203400 Sobic002G409600 Sobic002G409600 Sobic006G263200--Sobic002G409600 Sobic002G161800 Sobic002G161800 Sobic006G263200--Sobic002G161800 Sobic006G274600 Sobic006G274600 Sobic006G263200--Sobic006G274600 Sobic008G037800 Sobic008G037800 Sobic002G296600--Sobic008G037800 Sobic002G230600 Sobic002G230600 Sobic002G296600--Sobic002G230600 Sobic004G324100 Sobic004G324100 Sobic002G296600--Sobic004G324100 Sobic003G378400 Sobic003G378400 Sobic002G296600--Sobic003G378400 Sobic003G104500 Sobic003G104500 Sobic002G296600--Sobic003G104500 Sobic006G271500 Sobic006G271500 Sobic002G296600--Sobic006G271500 Sobic002G296600--Sobic003G003800 Sobic009G079950 Sobic009G079950 Sobic002G296600--Sobic009G079950 Sobic010G202300 Sobic010G202300 Sobic002G296600--Sobic010G202300 Sobic001G147650 Sobic001G147650 Sobic010G112200--Sobic001G147650 Sobic009G069100 Sobic009G069100 Sobic010G112200--Sobic009G069100 Sobic002G363200 Sobic002G363200 Sobic010G112200--Sobic002G363200 Sobic005G135400 Sobic005G135400 Sobic010G112200--Sobic005G135400 Sobic008G126000 Sobic008G126000 Sobic010G112200--Sobic008G126000 Sobic003G071100 Sobic003G071100 Sobic010G112200--Sobic003G071100 Sobic010G124500 Sobic010G124500 Sobic010G112200--Sobic010G124500 Sobic005G135800 Sobic005G135800 Sobic010G112200--Sobic005G135800 Sobic010G108200 Sobic010G108200 Sobic010G112200--Sobic010G108200 Sobic006G226200--Sobic003G236701 Sobic006G066500 Sobic006G066500 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic003G112200 Sobic003G112200 Sobic006G226200--Sobic003G112200 Sobic002G164600 Sobic002G164600 Sobic006G226200--Sobic002G164600 Sobic003G296400 Sobic003G296400 Sobic006G226200--Sobic003G296400 Sobic009G048000 Sobic009G048000 Sobic006G226200--Sobic009G048000 Sobic006G226200--Sobic003G231500 Sobic002G205500 Sobic002G205500 Sobic006G226200--Sobic002G205500 Sobic001G238600 Sobic001G238600 Sobic003G231500--Sobic001G238600 Sobic003G231500--Sobic003G236701 Sobic003G231500--Sobic006G066500 Sobic001G422300 Sobic001G422300 Sobic003G231500--Sobic001G422300 Sobic003G231500--Sobic006G226200 Sobic003G220000 Sobic003G220000 Sobic003G231500--Sobic003G220000 Sobic006G209300 Sobic006G209300 Sobic003G231500--Sobic006G209300 Sobic007G175400 Sobic007G175400 Sobic003G231500--Sobic007G175400 Sobic003G231500--Sobic008G126000 Sobic006G144600 Sobic006G144600 Sobic010G232500--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic010G232500--Sobic001G406700 Sobic005G229100 Sobic005G229100 Sobic010G232500--Sobic005G229100 Sobic003G387500 Sobic003G387500 Sobic010G232500--Sobic003G387500 Sobic010G232500--Sobic006G226200 Sobic002G167600 Sobic002G167600 Sobic010G232500--Sobic002G167600 Sobic001G399200 Sobic001G399200 Sobic010G232500--Sobic001G399200 Sobic010G232500--Sobic003G231500 Sobic010G232500--Sobic007G223600 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic007G223600--Sobic003G236701 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic007G223600--Sobic006G066500 Sobic001G224300 Sobic001G224300 Sobic007G223600--Sobic001G224300 Sobic008G059800 Sobic008G059800 Sobic007G223600--Sobic008G059800 Sobic001G217900 Sobic001G217900 Sobic003G101000--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic003G101000--Sobic004G082300 Sobic001G244600 Sobic001G244600 Sobic003G101000--Sobic001G244600 Sobic002G252300 Sobic002G252300 Sobic003G101000--Sobic002G252300 Sobic007G058100 Sobic007G058100 Sobic003G101000--Sobic007G058100 Sobic002G005600 Sobic002G005600 Sobic003G101000--Sobic002G005600 Sobic010G231300 Sobic010G231300 Sobic003G101000--Sobic010G231300 Sobic004G143300 Sobic004G143300 Sobic003G101000--Sobic004G143300 Sobic001G263100 Sobic001G263100 Sobic003G101000--Sobic001G263100 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic009G241600 Sobic009G241600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G236701--Sobic003G231500 Sobic003G236701--Sobic001G238600
Octagon: transcription factors


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