Gene annotation
Transcriptome id Sobic.003G012700.1
Synonym RPS15A, Sb03g001290
Functional annotation 40S ribosomal protein S15a, putative, expressed
UniProt C5XKB8
Pfam PF00410
Panther DB PTHR11758 PTHR11758:SF16
NCBI CDD KOG1754; 40S ribosomal protein S15/S22
KEGG Orthology K02957; RP-S15Ae, small subunit ribosomal protein S15Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G07770 : ribosomal protein S15A
RAP-DB (Rice) LOC_Os02g27760.1 : 40S ribosomal protein S15a, putative, expressed
MaizeGDB (Corn) Zm00025a033797
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G012700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G074300 40S ribosomal protein S29, putative, expressed K02980: RP-S29e, small subunit ribosomal protein S29e
2 Sobic.004G306200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
3 Sobic.003G044400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
4 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
5 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
6 Sobic.007G100425 - -
7 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
8 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
9 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
10 Sobic.001G132100 expressed protein -
11 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
12 Sobic.001G172000 expressed protein -
13 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
14 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
16 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
18 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
19 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
20 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e


Gene co-expression network
sample Sobic003G012700 Sobic003G012700 Sobic001G074300 Sobic001G074300 Sobic003G012700--Sobic001G074300 Sobic004G306200 Sobic004G306200 Sobic003G012700--Sobic004G306200 Sobic003G044400 Sobic003G044400 Sobic003G012700--Sobic003G044400 Sobic006G106100 Sobic006G106100 Sobic003G012700--Sobic006G106100 Sobic002G364500 Sobic002G364500 Sobic003G012700--Sobic002G364500 Sobic007G100425 Sobic007G100425 Sobic003G012700--Sobic007G100425 Sobic009G163800 Sobic009G163800 Sobic003G012700--Sobic009G163800 Sobic009G227400 Sobic009G227400 Sobic003G012700--Sobic009G227400 Sobic001G364500 Sobic001G364500 Sobic003G012700--Sobic001G364500 Sobic006G047400 Sobic006G047400 Sobic001G074300--Sobic006G047400 Sobic001G374700 Sobic001G374700 Sobic001G074300--Sobic001G374700 Sobic001G074300--Sobic009G163800 Sobic001G074300--Sobic006G106100 Sobic001G091801 Sobic001G091801 Sobic001G074300--Sobic001G091801 Sobic002G175100 Sobic002G175100 Sobic001G074300--Sobic002G175100 Sobic007G212600 Sobic007G212600 Sobic001G074300--Sobic007G212600 Sobic009G166500 Sobic009G166500 Sobic001G074300--Sobic009G166500 Sobic001G340500 Sobic001G340500 Sobic001G074300--Sobic001G340500 Sobic004G211833 Sobic004G211833 Sobic004G306200--Sobic004G211833 Sobic002G398901 Sobic002G398901 Sobic004G306200--Sobic002G398901 Sobic004G220000 Sobic004G220000 Sobic004G306200--Sobic004G220000 Sobic010G012500 Sobic010G012500 Sobic004G306200--Sobic010G012500 Sobic010G041600 Sobic010G041600 Sobic004G306200--Sobic010G041600 Sobic007G051000 Sobic007G051000 Sobic004G306200--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic004G306200--Sobic009G176000 Sobic005G188100 Sobic005G188100 Sobic004G306200--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic004G306200--Sobic002G190900 Sobic003G044400--Sobic009G163800 Sobic005G110800 Sobic005G110800 Sobic003G044400--Sobic005G110800 Sobic009G105700 Sobic009G105700 Sobic003G044400--Sobic009G105700 Sobic003G044400--Sobic009G166500 Sobic001G172000 Sobic001G172000 Sobic003G044400--Sobic001G172000 Sobic001G377800 Sobic001G377800 Sobic003G044400--Sobic001G377800 Sobic003G346600 Sobic003G346600 Sobic003G044400--Sobic003G346600 Sobic003G044400--Sobic001G074300 Sobic010G060500 Sobic010G060500 Sobic003G044400--Sobic010G060500 Sobic006G106100--Sobic001G091801 Sobic007G019400 Sobic007G019400 Sobic006G106100--Sobic007G019400 Sobic001G376600 Sobic001G376600 Sobic006G106100--Sobic001G376600 Sobic010G206200 Sobic010G206200 Sobic006G106100--Sobic010G206200 Sobic010G251600 Sobic010G251600 Sobic006G106100--Sobic010G251600 Sobic004G280700 Sobic004G280700 Sobic006G106100--Sobic004G280700 Sobic006G106100--Sobic002G175100 Sobic004G331400 Sobic004G331400 Sobic006G106100--Sobic004G331400 Sobic001G054900 Sobic001G054900 Sobic006G106100--Sobic001G054900 Sobic002G364100 Sobic002G364100 Sobic002G364500--Sobic002G364100 Sobic003G363800 Sobic003G363800 Sobic002G364500--Sobic003G363800 Sobic001G046300 Sobic001G046300 Sobic002G364500--Sobic001G046300 Sobic001G085400 Sobic001G085400 Sobic002G364500--Sobic001G085400 Sobic001G011200 Sobic001G011200 Sobic002G364500--Sobic001G011200 Sobic002G364500--Sobic001G091801 Sobic002G364500--Sobic009G163800 Sobic001G436200 Sobic001G436200 Sobic002G364500--Sobic001G436200 Sobic010G182600 Sobic010G182600 Sobic002G364500--Sobic010G182600 Sobic004G216800 Sobic004G216800 Sobic007G100425--Sobic004G216800 Sobic004G224900 Sobic004G224900 Sobic007G100425--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic007G100425--Sobic008G132400 Sobic007G100425--Sobic001G074300 Sobic001G048832 Sobic001G048832 Sobic007G100425--Sobic001G048832 Sobic001G005900 Sobic001G005900 Sobic007G100425--Sobic001G005900 Sobic004G138800 Sobic004G138800 Sobic007G100425--Sobic004G138800 Sobic003G063300 Sobic003G063300 Sobic007G100425--Sobic003G063300 Sobic007G100425--Sobic002G364500 Sobic009G163800--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic001G334300 Sobic001G334300 Sobic009G227400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic002G049300 Sobic002G049300 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic003G387900 Sobic003G387900 Sobic009G227400--Sobic003G387900 Sobic004G351500 Sobic004G351500 Sobic001G364500--Sobic004G351500 Sobic004G225500 Sobic004G225500 Sobic001G364500--Sobic004G225500 Sobic001G364500--Sobic004G224900 Sobic001G364500--Sobic001G005900 Sobic001G364500--Sobic001G048832 Sobic007G078100 Sobic007G078100 Sobic001G364500--Sobic007G078100 Sobic002G155500 Sobic002G155500 Sobic001G364500--Sobic002G155500 Sobic001G132100 Sobic001G132100 Sobic001G364500--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic001G364500--Sobic001G236300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.