Gene annotation
Transcriptome id Sobic.003G041100.1
Synonym Sb03g003670, TKI1
Functional annotation myb/SANT domain protein, putative, expressed
UniProt C5XMN3
Pfam -
Panther DB PTHR21677 PTHR21677:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36960 : TSL-kinase interacting protein 1
RAP-DB (Rice) LOC_Os01g08680.1 : myb/SANT domain protein, putative, expressed
MaizeGDB (Corn) Zm00025a023155
Brachypodium PNT70089 , PNT70088 , PNT70087 , PNT70090
Barley HORVU7Hr1G002150.5 , HORVU7Hr1G002150.4 , HORVU7Hr1G002150.7 , HORVU7Hr1G002150.6 , HORVU7Hr1G002150.1 , HORVU3Hr1G021310.13 , HORVU7Hr1G002150.3 , HORVU7Hr1G002150.2 , HORVU7Hr1G002150.9 , HORVU7Hr1G002150.8 , HORVU3Hr1G021310.15 , HORVU3Hr1G021310.12 , HORVU3Hr1G021310.10 , HORVU3Hr1G021310.11 , HORVU3Hr1G021310.14 , HORVU3Hr1G021310.4 , HORVU3Hr1G021310.5 , HORVU3Hr1G021310.16 , HORVU3Hr1G021310.6 , HORVU3Hr1G021310.7 , HORVU3Hr1G021310.1 , HORVU7Hr1G002150.11 , HORVU7Hr1G002150.10 , HORVU7Hr1G002150.13 , HORVU7Hr1G002150.12 , HORVU7Hr1G002150.15 , HORVU7Hr1G002150.14 , HORVU7Hr1G002150.17 , HORVU7Hr1G002150.16 , HORVU3Hr1G021310.3 , HORVU3Hr1G021310.8 , HORVU3Hr1G021310.9 , HORVU3Hr1G021310.2
Wheat TraesCS3A02G116900 , TraesCS3D02G118700 , TraesCS7A02G020300 , TraesCS3A02G116900 , TraesCS3B02G135900
Populus -


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cDNA sequences
Sobic.003G041100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
2 Sobic.009G191000 MATH domain containing protein, expressed -
3 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
4 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
5 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
6 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
7 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
8 Sobic.010G010700 PHD-finger family protein, expressed -
9 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
10 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
11 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
12 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
13 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
14 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
15 Sobic.003G247500 expressed protein -
16 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
17 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
18 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
19 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
20 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1


Gene co-expression network
sample Sobic003G041100 Sobic003G041100 Sobic009G113000 Sobic009G113000 Sobic003G041100--Sobic009G113000 Sobic009G191000 Sobic009G191000 Sobic003G041100--Sobic009G191000 Sobic010G153700 Sobic010G153700 Sobic003G041100--Sobic010G153700 Sobic010G224000 Sobic010G224000 Sobic003G041100--Sobic010G224000 Sobic001G071400 Sobic001G071400 Sobic003G041100--Sobic001G071400 Sobic001G207000 Sobic001G207000 Sobic003G041100--Sobic001G207000 Sobic002G134200 Sobic002G134200 Sobic003G041100--Sobic002G134200 Sobic010G010700 Sobic010G010700 Sobic003G041100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic003G041100--Sobic002G008900 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic004G264400 Sobic004G264400 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic007G075400 Sobic007G075400 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic004G331100 Sobic004G331100 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic002G315200 Sobic002G315200 Sobic010G153700--Sobic002G315200 Sobic009G026500 Sobic009G026500 Sobic010G153700--Sobic009G026500 Sobic010G153700--Sobic009G191000 Sobic001G512700 Sobic001G512700 Sobic010G153700--Sobic001G512700 Sobic010G153700--Sobic002G008900 Sobic010G153700--Sobic002G134200 Sobic002G006900 Sobic002G006900 Sobic010G153700--Sobic002G006900 Sobic010G153700--Sobic001G071400 Sobic001G214300 Sobic001G214300 Sobic010G153700--Sobic001G214300 Sobic010G112000 Sobic010G112000 Sobic010G224000--Sobic010G112000 Sobic010G224000--Sobic009G113000 Sobic001G248300 Sobic001G248300 Sobic010G224000--Sobic001G248300 Sobic010G224000--Sobic009G053900 Sobic010G001500 Sobic010G001500 Sobic010G224000--Sobic010G001500 Sobic010G224000--Sobic007G075400 Sobic010G224000--Sobic010G153700 Sobic010G224000--Sobic001G121200 Sobic010G224000--Sobic004G347400 Sobic001G071400--Sobic002G134200 Sobic002G309600 Sobic002G309600 Sobic001G071400--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic001G071400--Sobic003G280800 Sobic008G047800 Sobic008G047800 Sobic001G071400--Sobic008G047800 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic009G044800 Sobic009G044800 Sobic001G207000--Sobic009G044800 Sobic002G045600 Sobic002G045600 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G194200 Sobic001G194200 Sobic001G207000--Sobic001G194200 Sobic008G118200 Sobic008G118200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic010G206900 Sobic010G206900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900
Octagon: transcription factors


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