Gene annotation
| Transcriptome id | Sobic.003G057900.1 |
|---|---|
| Synonym | RPL16B |
| Functional annotation | ribosomal protein L5, putative, expressed |
| UniProt | C5XNJ1 |
| Pfam | PF00673 |
| Panther DB | PTHR11994 PTHR11994:SF14 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G18730 : ribosomal protein L16B |
|---|---|
| RAP-DB (Rice) | LOC_Os02g14059.2 : ribosomal protein L5, putative, expressed |
| MaizeGDB (Corn) | Zm00025a004196 , Zm00025a022996 , Zm00025a003681 , Zm00025a025493 , Zm00025a005990 |
| Brachypodium | KQK03237 , KQK07062 , PNT70138 |
| Barley | HORVU3Hr1G026060.3 , HORVU3Hr1G026060.2 , HORVU3Hr1G026060.1 , HORVU3Hr1G026060.5 , HORVU7Hr1G044560.1 , HORVU3Hr1G026060.4 , HORVU7Hr1G062960.2 , HORVU7Hr1G062960.1 , HORVU1Hr1G032650.1 |
| Wheat | TraesCS3D02G137600 , TraesCS3A02G136800 , TraesCS3B02G154600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G192100 | "Belongs to the cytochrome P450 family, up-regulated under all the stress condition"(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Belongs to the cytochrome P450 family(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed | - |
| 2 | Sobic.010G006350 | - | - |
| 3 | Sobic.009G132900 | PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed | K01006: pyruvate, orthophosphate dikinase |
| 4 | Sobic.003G131000 | expressed protein | - |
| 5 | Sobic.008G080400 | "cyanogenic beta-glucosidase dhurrinase, up-regulated under drought stress "(PubMedID : 24655390)@Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 6 | Sobic.010G094301 | - | - |
| 7 | Sobic.006G136500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 8 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 9 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 10 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.010G109500 | expressed protein | - |
| 12 | Sobic.003G069100 | regulator of ribonuclease, putative, expressed | - |
| 13 | Sobic.007G171600 | Ser/Thr protein phosphatase family protein, putative, expressed | K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase |
| 14 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 15 | Sobic.008G030200 | LTPL9 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 16 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 17 | Sobic.010G038500 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 18 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 19 | Sobic.008G036300 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 20 | Sobic.002G000500 | isoflavone reductase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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