Gene annotation
Transcriptome id Sobic.003G158000.1
Synonym PHS1, Sb03g013770
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
PHS1, putative, expressed
UniProt C5XJV9
Pfam PF00782 PF09192
Panther DB PTHR10159 PTHR10159:SF346
NCBI CDD KOG1718; Dual specificity phosphatase
KEGG Orthology K14165; atypical dual specificity phosphatase
Gene Ontology GO:0008138; protein tyrosine/serine/threonine phosphatase activity GO:0006470protein dephosphorylation


Orthologs (automatic annotation)
TAIR AT5G23720 : dual specificity protein phosphatase family protein
RAP-DB (Rice) LOC_Os01g24470.1 : PHS1, putative, expressed
MaizeGDB (Corn) Zm00025a024486 , Zm00025a036168
Brachypodium PNT70469 , PNT70470
Barley HORVU7Hr1G117420.8 , HORVU7Hr1G117420.9 , HORVU7Hr1G117420.4 , HORVU7Hr1G117420.5 , HORVU7Hr1G117420.6 , HORVU7Hr1G117420.7 , HORVU7Hr1G117420.1 , HORVU7Hr1G117420.2 , HORVU7Hr1G117420.3 , HORVU7Hr1G117420.10
Wheat TraesCS7B02G450800 , TraesCS7D02G521000 , TraesCS7A02G533600 , TraesCS7A02G533600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G037700 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
2 Sobic.006G218200 expressed protein -
3 Sobic.001G186700 expressed protein -
4 Sobic.007G125200 cell division cycle protein 48, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
5 Sobic.009G138401 - -
6 Sobic.010G086100 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
7 Sobic.002G402100 LTPL60 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
8 Sobic.002G027901 - K10523: speckle-type POZ protein
9 Sobic.010G037500 expressed protein -
10 Sobic.008G070600 leafbladeless1, putative, expressed -
11 Sobic.005G198600 OsFBX422 - F-box domain containing protein, expressed -
12 Sobic.003G183200 OsFBX249 - F-box domain containing protein, expressed -
13 Sobic.001G407300 expressed protein -
14 Sobic.009G047066 - -
15 Sobic.009G212900 myosin head family protein, expressed K10357: myosin V
16 Sobic.004G200100 leucine-rich repeat family protein, putative, expressed -
17 Sobic.010G037701 - -
18 Sobic.004G174600 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
19 Sobic.002G174100 - -
20 Sobic.006G230000 - -


Gene co-expression network
sample Sobic003G158000 Sobic003G158000 Sobic009G037700 Sobic009G037700 Sobic003G158000--Sobic009G037700 Sobic006G218200 Sobic006G218200 Sobic003G158000--Sobic006G218200 Sobic001G186700 Sobic001G186700 Sobic003G158000--Sobic001G186700 Sobic007G125200 Sobic007G125200 Sobic003G158000--Sobic007G125200 Sobic009G138401 Sobic009G138401 Sobic003G158000--Sobic009G138401 Sobic010G086100 Sobic010G086100 Sobic003G158000--Sobic010G086100 Sobic002G402100 Sobic002G402100 Sobic003G158000--Sobic002G402100 Sobic002G027901 Sobic002G027901 Sobic003G158000--Sobic002G027901 Sobic010G037500 Sobic010G037500 Sobic003G158000--Sobic010G037500 Sobic009G037700--Sobic006G218200 Sobic009G037700--Sobic009G138401 Sobic003G066300 Sobic003G066300 Sobic009G037700--Sobic003G066300 Sobic004G288000 Sobic004G288000 Sobic009G037700--Sobic004G288000 Sobic001G332400 Sobic001G332400 Sobic009G037700--Sobic001G332400 Sobic008G095766 Sobic008G095766 Sobic009G037700--Sobic008G095766 Sobic001G003400 Sobic001G003400 Sobic009G037700--Sobic001G003400 Sobic004G031900 Sobic004G031900 Sobic009G037700--Sobic004G031900 Sobic002G193200 Sobic002G193200 Sobic009G037700--Sobic002G193200 Sobic006G218200--Sobic009G037700 Sobic008G188800 Sobic008G188800 Sobic006G218200--Sobic008G188800 Sobic008G070600 Sobic008G070600 Sobic006G218200--Sobic008G070600 Sobic001G457500 Sobic001G457500 Sobic006G218200--Sobic001G457500 Sobic006G219801 Sobic006G219801 Sobic006G218200--Sobic006G219801 Sobic007G144100 Sobic007G144100 Sobic006G218200--Sobic007G144100 Sobic010G058300 Sobic010G058300 Sobic006G218200--Sobic010G058300 Sobic009G047066 Sobic009G047066 Sobic006G218200--Sobic009G047066 Sobic003G072700 Sobic003G072700 Sobic006G218200--Sobic003G072700 Sobic001G144150 Sobic001G144150 Sobic001G186700--Sobic001G144150 Sobic003G145250 Sobic003G145250 Sobic001G186700--Sobic003G145250 Sobic009G030001 Sobic009G030001 Sobic001G186700--Sobic009G030001 Sobic005G191200 Sobic005G191200 Sobic001G186700--Sobic005G191200 Sobic005G199800 Sobic005G199800 Sobic001G186700--Sobic005G199800 Sobic003G075300 Sobic003G075300 Sobic001G186700--Sobic003G075300 Sobic003G191300 Sobic003G191300 Sobic001G186700--Sobic003G191300 Sobic010G012700 Sobic010G012700 Sobic001G186700--Sobic010G012700 Sobic005G041450 Sobic005G041450 Sobic001G186700--Sobic005G041450 Sobic003G406060 Sobic003G406060 Sobic007G125200--Sobic003G406060 Sobic005G198600 Sobic005G198600 Sobic007G125200--Sobic005G198600 Sobic005G200100 Sobic005G200100 Sobic007G125200--Sobic005G200100 Sobic009G170900 Sobic009G170900 Sobic007G125200--Sobic009G170900 Sobic007G125200--Sobic005G191200 Sobic001G251000 Sobic001G251000 Sobic007G125200--Sobic001G251000 Sobic003G302532 Sobic003G302532 Sobic007G125200--Sobic003G302532 Sobic006G189600 Sobic006G189600 Sobic007G125200--Sobic006G189600 Sobic007G125200--Sobic001G186700 Sobic001G210600 Sobic001G210600 Sobic009G138401--Sobic001G210600 Sobic008G002201 Sobic008G002201 Sobic009G138401--Sobic008G002201 Sobic003G356800 Sobic003G356800 Sobic009G138401--Sobic003G356800 Sobic009G138401--Sobic001G457500 Sobic010G064200 Sobic010G064200 Sobic009G138401--Sobic010G064200 Sobic010G263700 Sobic010G263700 Sobic009G138401--Sobic010G263700 Sobic003G183100 Sobic003G183100 Sobic009G138401--Sobic003G183100 Sobic007G209900 Sobic007G209900 Sobic009G138401--Sobic007G209900 Sobic009G246600 Sobic009G246600 Sobic009G138401--Sobic009G246600 Sobic010G086100--Sobic002G027901 Sobic001G407300 Sobic001G407300 Sobic010G086100--Sobic001G407300 Sobic006G230000 Sobic006G230000 Sobic010G086100--Sobic006G230000 Sobic003G211000 Sobic003G211000 Sobic010G086100--Sobic003G211000 Sobic010G261900 Sobic010G261900 Sobic010G086100--Sobic010G261900 Sobic010G086100--Sobic001G186700 Sobic004G048900 Sobic004G048900 Sobic010G086100--Sobic004G048900 Sobic010G086100--Sobic009G030001 Sobic004G281500 Sobic004G281500 Sobic010G086100--Sobic004G281500 Sobic005G207200 Sobic005G207200 Sobic002G402100--Sobic005G207200 Sobic001G209500 Sobic001G209500 Sobic002G402100--Sobic001G209500 Sobic001G246800 Sobic001G246800 Sobic002G402100--Sobic001G246800 Sobic005G070000 Sobic005G070000 Sobic002G402100--Sobic005G070000 Sobic007G133766 Sobic007G133766 Sobic002G402100--Sobic007G133766 Sobic008G101850 Sobic008G101850 Sobic002G402100--Sobic008G101850 Sobic004G174600 Sobic004G174600 Sobic002G402100--Sobic004G174600 Sobic010G252550 Sobic010G252550 Sobic002G402100--Sobic010G252550 Sobic002G402100--Sobic005G198600 Sobic010G074000 Sobic010G074000 Sobic002G027901--Sobic010G074000 Sobic005G161400 Sobic005G161400 Sobic002G027901--Sobic005G161400 Sobic006G232700 Sobic006G232700 Sobic002G027901--Sobic006G232700 Sobic003G254200 Sobic003G254200 Sobic002G027901--Sobic003G254200 Sobic002G027901--Sobic009G246600 Sobic002G027901--Sobic003G211000 Sobic010G030500 Sobic010G030500 Sobic002G027901--Sobic010G030500 Sobic002G027901--Sobic005G199800 Sobic003G394000 Sobic003G394000 Sobic002G027901--Sobic003G394000 Sobic010G037500--Sobic003G158000 Sobic010G037500--Sobic006G218200 Sobic010G037500--Sobic009G037700 Sobic003G211900 Sobic003G211900 Sobic010G037500--Sobic003G211900 Sobic002G174100 Sobic002G174100 Sobic010G037500--Sobic002G174100 Sobic004G276800 Sobic004G276800 Sobic010G037500--Sobic004G276800 Sobic009G020300 Sobic009G020300 Sobic010G037500--Sobic009G020300 Sobic010G037500--Sobic001G210600 Sobic010G037500--Sobic001G407300
Octagon: transcription factors


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