Gene annotation
Transcriptome id Sobic.003G175500.1
Synonym
Functional annotation -
UniProt A0A1B6Q3W4
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
2 Sobic.004G006500 expressed protein -
3 Sobic.001G030600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
4 Sobic.010G097900 expressed protein -
5 Sobic.003G138400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY9, expressed -
6 Sobic.010G273700 no apical meristem protein, putative, expressed -
7 Sobic.002G185200 VQ domain containing protein, putative, expressed -
8 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
9 Sobic.002G089700 cytochrome P450, putative, expressed -
10 Sobic.006G114200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@heavy metal associated domain containing protein, expressed -
11 Sobic.003G109832 - -
12 Sobic.003G370400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
13 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
14 Sobic.008G049250 - -
15 Sobic.004G220600 phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
16 Sobic.003G337800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY108, expressed -
17 Sobic.001G314300 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
18 Sobic.001G095750 - -
19 Sobic.001G339600 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.002G195800 inactive receptor kinase At2g26730 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G175500 Sobic003G175500 Sobic004G169900 Sobic004G169900 Sobic003G175500--Sobic004G169900 Sobic004G006500 Sobic004G006500 Sobic003G175500--Sobic004G006500 Sobic001G030600 Sobic001G030600 Sobic003G175500--Sobic001G030600 Sobic010G097900 Sobic010G097900 Sobic003G175500--Sobic010G097900 Sobic003G138400 Sobic003G138400 Sobic003G175500--Sobic003G138400 Sobic010G273700 Sobic010G273700 Sobic003G175500--Sobic010G273700 Sobic002G185200 Sobic002G185200 Sobic003G175500--Sobic002G185200 Sobic001G146400 Sobic001G146400 Sobic003G175500--Sobic001G146400 Sobic002G089700 Sobic002G089700 Sobic003G175500--Sobic002G089700 Sobic004G169900--Sobic001G146400 Sobic009G010400 Sobic009G010400 Sobic004G169900--Sobic009G010400 Sobic010G018300 Sobic010G018300 Sobic004G169900--Sobic010G018300 Sobic002G386200 Sobic002G386200 Sobic004G169900--Sobic002G386200 Sobic004G169900--Sobic004G006500 Sobic010G102000 Sobic010G102000 Sobic004G169900--Sobic010G102000 Sobic005G165900 Sobic005G165900 Sobic004G169900--Sobic005G165900 Sobic006G257700 Sobic006G257700 Sobic004G169900--Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic004G169900--Sobic001G064900 Sobic004G006500--Sobic002G185200 Sobic002G418900 Sobic002G418900 Sobic004G006500--Sobic002G418900 Sobic001G118900 Sobic001G118900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic009G028500 Sobic009G028500 Sobic004G006500--Sobic009G028500 Sobic004G065900 Sobic004G065900 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic006G114200 Sobic006G114200 Sobic004G006500--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic004G006500--Sobic004G086800 Sobic001G095750 Sobic001G095750 Sobic001G030600--Sobic001G095750 Sobic001G030600--Sobic004G006500 Sobic001G030600--Sobic006G114200 Sobic001G030600--Sobic001G118900 Sobic001G030600--Sobic002G418900 Sobic007G196400 Sobic007G196400 Sobic001G030600--Sobic007G196400 Sobic001G030600--Sobic004G169900 Sobic001G030600--Sobic010G273700 Sobic007G139900 Sobic007G139900 Sobic001G030600--Sobic007G139900 Sobic010G097900--Sobic001G146400 Sobic010G097900--Sobic004G169900 Sobic010G097900--Sobic010G018300 Sobic010G097900--Sobic002G386200 Sobic001G146500 Sobic001G146500 Sobic010G097900--Sobic001G146500 Sobic004G052500 Sobic004G052500 Sobic010G097900--Sobic004G052500 Sobic010G097900--Sobic003G138400 Sobic010G273600 Sobic010G273600 Sobic010G097900--Sobic010G273600 Sobic006G168000 Sobic006G168000 Sobic010G097900--Sobic006G168000 Sobic003G138400--Sobic010G273700 Sobic004G220600 Sobic004G220600 Sobic003G138400--Sobic004G220600 Sobic003G138400--Sobic004G006500 Sobic001G339600 Sobic001G339600 Sobic003G138400--Sobic001G339600 Sobic009G227800 Sobic009G227800 Sobic003G138400--Sobic009G227800 Sobic003G138400--Sobic004G169900 Sobic004G092000 Sobic004G092000 Sobic003G138400--Sobic004G092000 Sobic002G216500 Sobic002G216500 Sobic003G138400--Sobic002G216500 Sobic003G138400--Sobic009G010400 Sobic010G273700--Sobic009G227800 Sobic010G273700--Sobic003G138400 Sobic003G109832 Sobic003G109832 Sobic010G273700--Sobic003G109832 Sobic007G025900 Sobic007G025900 Sobic010G273700--Sobic007G025900 Sobic007G215500 Sobic007G215500 Sobic010G273700--Sobic007G215500 Sobic010G273700--Sobic004G006500 Sobic003G376200 Sobic003G376200 Sobic010G273700--Sobic003G376200 Sobic010G273700--Sobic004G220600 Sobic001G314300 Sobic001G314300 Sobic010G273700--Sobic001G314300 Sobic002G185200--Sobic004G006500 Sobic002G185200--Sobic002G418900 Sobic002G294600 Sobic002G294600 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic006G146500 Sobic006G146500 Sobic002G185200--Sobic006G146500 Sobic007G143400 Sobic007G143400 Sobic002G185200--Sobic007G143400 Sobic002G185200--Sobic006G114200 Sobic002G185200--Sobic004G086800 Sobic001G146400--Sobic010G018300 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic001G146400--Sobic004G169900 Sobic001G146400--Sobic001G146500 Sobic009G067400 Sobic009G067400 Sobic001G146400--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic003G225900 Sobic003G225900 Sobic002G089700--Sobic003G225900 Sobic010G006700 Sobic010G006700 Sobic002G089700--Sobic010G006700 Sobic003G373150 Sobic003G373150 Sobic002G089700--Sobic003G373150 Sobic003G078501 Sobic003G078501 Sobic002G089700--Sobic003G078501 Sobic006G267900 Sobic006G267900 Sobic002G089700--Sobic006G267900 Sobic003G141800 Sobic003G141800 Sobic002G089700--Sobic003G141800 Sobic005G087800 Sobic005G087800 Sobic002G089700--Sobic005G087800 Sobic001G125100 Sobic001G125100 Sobic002G089700--Sobic001G125100 Sobic007G217300 Sobic007G217300 Sobic002G089700--Sobic007G217300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.