Gene annotation
Transcriptome id Sobic.003G337800.1
Synonym ATWRKY38, WRKY38, Sb03g038200
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WRKY108, expressed
UniProt C5XNA2
Pfam PF03106
Panther DB PTHR31282 PTHR31282:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G66600 : ABA overly sensitive mutant 3
RAP-DB (Rice) LOC_Os01g60600.1 : WRKY108, expressed
MaizeGDB (Corn) Zm00025a027062
Brachypodium KQK10351 , KQK10352
Barley HORVU3Hr1G081000.2 , HORVU3Hr1G081000.1 , HORVU3Hr1G081000.3
Wheat TraesCS3B02G375600 , TraesCS3D02G337400 , TraesCS3A02G343600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
2 Sobic.001G216300 glutaredoxin domain containing protein, putative, expressed -
3 Sobic.010G052600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.001G489600 expressed protein -
5 Sobic.002G185200 VQ domain containing protein, putative, expressed -
6 Sobic.003G225900 expressed protein -
7 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
8 Sobic.002G427400 COBRA-like protein 7 precursor, putative, expressed -
9 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
10 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
11 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
12 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.003G293600 -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
14 Sobic.001G314300 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
15 Sobic.009G014200 clathrin assembly protein, putative, expressed -
16 Sobic.002G214800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.003G186500 N-rich protein, putative, expressed -
18 Sobic.007G145700 expressed protein -
19 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
20 Sobic.002G344700 remorin, putative, expressed -


Gene co-expression network
sample Sobic003G337800 Sobic003G337800 Sobic001G051600 Sobic001G051600 Sobic003G337800--Sobic001G051600 Sobic001G216300 Sobic001G216300 Sobic003G337800--Sobic001G216300 Sobic010G052600 Sobic010G052600 Sobic003G337800--Sobic010G052600 Sobic001G489600 Sobic001G489600 Sobic003G337800--Sobic001G489600 Sobic002G185200 Sobic002G185200 Sobic003G337800--Sobic002G185200 Sobic003G225900 Sobic003G225900 Sobic003G337800--Sobic003G225900 Sobic003G352400 Sobic003G352400 Sobic003G337800--Sobic003G352400 Sobic002G427400 Sobic002G427400 Sobic003G337800--Sobic002G427400 Sobic006G095600 Sobic006G095600 Sobic003G337800--Sobic006G095600 Sobic001G051600--Sobic001G489600 Sobic001G476400 Sobic001G476400 Sobic001G051600--Sobic001G476400 Sobic001G051600--Sobic006G095600 Sobic002G203000 Sobic002G203000 Sobic001G051600--Sobic002G203000 Sobic007G057100 Sobic007G057100 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic008G159100 Sobic008G159100 Sobic001G051600--Sobic008G159100 Sobic001G081600 Sobic001G081600 Sobic001G051600--Sobic001G081600 Sobic004G025000 Sobic004G025000 Sobic001G051600--Sobic004G025000 Sobic001G314700 Sobic001G314700 Sobic001G216300--Sobic001G314700 Sobic006G205200 Sobic006G205200 Sobic001G216300--Sobic006G205200 Sobic001G161200 Sobic001G161200 Sobic001G216300--Sobic001G161200 Sobic007G196600 Sobic007G196600 Sobic001G216300--Sobic007G196600 Sobic001G216300--Sobic003G352400 Sobic001G216300--Sobic002G185200 Sobic001G216300--Sobic003G337800 Sobic006G146500 Sobic006G146500 Sobic001G216300--Sobic006G146500 Sobic004G006500 Sobic004G006500 Sobic001G216300--Sobic004G006500 Sobic010G052600--Sobic003G352400 Sobic006G044932 Sobic006G044932 Sobic010G052600--Sobic006G044932 Sobic003G082600 Sobic003G082600 Sobic010G052600--Sobic003G082600 Sobic002G373001 Sobic002G373001 Sobic010G052600--Sobic002G373001 Sobic002G214800 Sobic002G214800 Sobic010G052600--Sobic002G214800 Sobic003G277500 Sobic003G277500 Sobic010G052600--Sobic003G277500 Sobic001G530350 Sobic001G530350 Sobic010G052600--Sobic001G530350 Sobic006G138500 Sobic006G138500 Sobic010G052600--Sobic006G138500 Sobic010G041700 Sobic010G041700 Sobic010G052600--Sobic010G041700 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic009G071800 Sobic009G071800 Sobic001G489600--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic001G489600--Sobic004G286600 Sobic002G185200--Sobic004G006500 Sobic002G418900 Sobic002G418900 Sobic002G185200--Sobic002G418900 Sobic002G294600 Sobic002G294600 Sobic002G185200--Sobic002G294600 Sobic004G065900 Sobic004G065900 Sobic002G185200--Sobic004G065900 Sobic001G118900 Sobic001G118900 Sobic002G185200--Sobic001G118900 Sobic002G185200--Sobic006G146500 Sobic007G143400 Sobic007G143400 Sobic002G185200--Sobic007G143400 Sobic006G114200 Sobic006G114200 Sobic002G185200--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic002G185200--Sobic004G086800 Sobic006G267900 Sobic006G267900 Sobic003G225900--Sobic006G267900 Sobic002G189000 Sobic002G189000 Sobic003G225900--Sobic002G189000 Sobic002G271100 Sobic002G271100 Sobic003G225900--Sobic002G271100 Sobic003G225900--Sobic002G427400 Sobic003G373150 Sobic003G373150 Sobic003G225900--Sobic003G373150 Sobic003G225900--Sobic001G081600 Sobic010G260300 Sobic010G260300 Sobic003G225900--Sobic010G260300 Sobic005G087800 Sobic005G087800 Sobic003G225900--Sobic005G087800 Sobic004G283201 Sobic004G283201 Sobic003G225900--Sobic004G283201 Sobic003G341100 Sobic003G341100 Sobic003G352400--Sobic003G341100 Sobic002G118600 Sobic002G118600 Sobic003G352400--Sobic002G118600 Sobic010G083600 Sobic010G083600 Sobic003G352400--Sobic010G083600 Sobic007G090300 Sobic007G090300 Sobic003G352400--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic003G352400--Sobic005G109000 Sobic010G102000 Sobic010G102000 Sobic003G352400--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G352400--Sobic001G341600 Sobic007G145700 Sobic007G145700 Sobic003G352400--Sobic007G145700 Sobic002G374100 Sobic002G374100 Sobic003G352400--Sobic002G374100 Sobic007G166900 Sobic007G166900 Sobic002G427400--Sobic007G166900 Sobic001G080300 Sobic001G080300 Sobic002G427400--Sobic001G080300 Sobic002G427400--Sobic008G159100 Sobic004G278200 Sobic004G278200 Sobic002G427400--Sobic004G278200 Sobic002G427400--Sobic003G373150 Sobic010G006700 Sobic010G006700 Sobic002G427400--Sobic010G006700 Sobic002G427400--Sobic003G225900 Sobic003G032900 Sobic003G032900 Sobic002G427400--Sobic003G032900 Sobic002G427400--Sobic006G267900 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400
Octagon: transcription factors


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