Gene annotation
Transcriptome id Sobic.003G193000.1
Synonym Sb03g025650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
leucine rich repeat protein, putative, expressed
UniProt C5XNQ4
Pfam PF08263 PF13855
Panther DB PTHR27004 PTHR27004:SF36
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G34930 : disease resistance family protein / LRR family protein
RAP-DB (Rice) LOC_Os02g17400.1 : leucine rich repeat protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G083110.1 , HORVU5Hr1G083110.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G053700 - -
2 Sobic.006G259700 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
3 Sobic.008G150100 resistance protein, putative, expressed -
4 Sobic.005G053800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
5 Sobic.004G255200 CSLE2 - cellulose synthase-like family E, expressed -
6 Sobic.005G102900 NBS-LRR disease resistance protein, putative, expressed -
7 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
8 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
9 Sobic.010G193900 N-terminal asparagine amidohydrolase, putative, expressed K14662: protein N-terminal asparagine amidohydrolase
10 Sobic.007G021100 carrier, putative, expressed -
11 Sobic.008G179900 cysteine synthase, putative, expressed K01738: cysteine synthase
12 Sobic.004G008900 Sphingoid base hydroxylase 2 SBH2 (At)(PubMedID : 27208977)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
13 Sobic.001G438700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
14 Sobic.005G219300 resistance protein, putative, expressed -
15 Sobic.007G021200 carrier, putative, expressed -
16 Sobic.001G279601 - -
17 Sobic.009G139900 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
18 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
19 Sobic.006G016000 - -
20 Sobic.010G123400 GRAM and C2 domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G193000 Sobic003G193000 Sobic005G053700 Sobic005G053700 Sobic003G193000--Sobic005G053700 Sobic006G259700 Sobic006G259700 Sobic003G193000--Sobic006G259700 Sobic008G150100 Sobic008G150100 Sobic003G193000--Sobic008G150100 Sobic005G053800 Sobic005G053800 Sobic003G193000--Sobic005G053800 Sobic004G255200 Sobic004G255200 Sobic003G193000--Sobic004G255200 Sobic005G102900 Sobic005G102900 Sobic003G193000--Sobic005G102900 Sobic001G243100 Sobic001G243100 Sobic003G193000--Sobic001G243100 Sobic005G110541 Sobic005G110541 Sobic003G193000--Sobic005G110541 Sobic010G193900 Sobic010G193900 Sobic003G193000--Sobic010G193900 Sobic005G053700--Sobic005G110541 Sobic006G030800 Sobic006G030800 Sobic005G053700--Sobic006G030800 Sobic005G053700--Sobic005G053800 Sobic005G100800 Sobic005G100800 Sobic005G053700--Sobic005G100800 Sobic007G021100 Sobic007G021100 Sobic005G053700--Sobic007G021100 Sobic001G353200 Sobic001G353200 Sobic005G053700--Sobic001G353200 Sobic007G021200 Sobic007G021200 Sobic005G053700--Sobic007G021200 Sobic005G115600 Sobic005G115600 Sobic005G053700--Sobic005G115600 Sobic003G192600 Sobic003G192600 Sobic005G053700--Sobic003G192600 Sobic002G041200 Sobic002G041200 Sobic006G259700--Sobic002G041200 Sobic009G003000 Sobic009G003000 Sobic006G259700--Sobic009G003000 Sobic006G259700--Sobic008G150100 Sobic001G142800 Sobic001G142800 Sobic006G259700--Sobic001G142800 Sobic006G271500 Sobic006G271500 Sobic006G259700--Sobic006G271500 Sobic009G139900 Sobic009G139900 Sobic006G259700--Sobic009G139900 Sobic006G259700--Sobic001G243100 Sobic010G115500 Sobic010G115500 Sobic006G259700--Sobic010G115500 Sobic001G203400 Sobic001G203400 Sobic006G259700--Sobic001G203400 Sobic008G150100--Sobic006G259700 Sobic010G122000 Sobic010G122000 Sobic008G150100--Sobic010G122000 Sobic008G150100--Sobic003G192600 Sobic001G438700 Sobic001G438700 Sobic008G150100--Sobic001G438700 Sobic004G103400 Sobic004G103400 Sobic008G150100--Sobic004G103400 Sobic008G133700 Sobic008G133700 Sobic008G150100--Sobic008G133700 Sobic008G150100--Sobic001G353200 Sobic003G344200 Sobic003G344200 Sobic008G150100--Sobic003G344200 Sobic004G153100 Sobic004G153100 Sobic008G150100--Sobic004G153100 Sobic005G053200 Sobic005G053200 Sobic005G053800--Sobic005G053200 Sobic010G227800 Sobic010G227800 Sobic005G053800--Sobic010G227800 Sobic004G057500 Sobic004G057500 Sobic005G053800--Sobic004G057500 Sobic005G053800--Sobic005G053700 Sobic005G053800--Sobic005G102900 Sobic010G175400 Sobic010G175400 Sobic005G053800--Sobic010G175400 Sobic005G053800--Sobic006G259700 Sobic003G174301 Sobic003G174301 Sobic005G053800--Sobic003G174301 Sobic006G225900 Sobic006G225900 Sobic005G053800--Sobic006G225900 Sobic009G210600 Sobic009G210600 Sobic004G255200--Sobic009G210600 Sobic001G427200 Sobic001G427200 Sobic004G255200--Sobic001G427200 Sobic005G086100 Sobic005G086100 Sobic004G255200--Sobic005G086100 Sobic004G174100 Sobic004G174100 Sobic004G255200--Sobic004G174100 Sobic002G087800 Sobic002G087800 Sobic004G255200--Sobic002G087800 Sobic004G067200 Sobic004G067200 Sobic004G255200--Sobic004G067200 Sobic003G333501 Sobic003G333501 Sobic004G255200--Sobic003G333501 Sobic009G099500 Sobic009G099500 Sobic004G255200--Sobic009G099500 Sobic004G225100 Sobic004G225100 Sobic004G255200--Sobic004G225100 Sobic003G207500 Sobic003G207500 Sobic005G102900--Sobic003G207500 Sobic005G133600 Sobic005G133600 Sobic005G102900--Sobic005G133600 Sobic007G188800 Sobic007G188800 Sobic005G102900--Sobic007G188800 Sobic005G102900--Sobic004G057500 Sobic007G185300 Sobic007G185300 Sobic005G102900--Sobic007G185300 Sobic001G475100 Sobic001G475100 Sobic005G102900--Sobic001G475100 Sobic010G121100 Sobic010G121100 Sobic005G102900--Sobic010G121100 Sobic010G205600 Sobic010G205600 Sobic005G102900--Sobic010G205600 Sobic010G273300 Sobic010G273300 Sobic005G102900--Sobic010G273300 Sobic001G243100--Sobic005G110541 Sobic007G193200 Sobic007G193200 Sobic001G243100--Sobic007G193200 Sobic001G243100--Sobic005G100800 Sobic001G243100--Sobic001G353200 Sobic002G041100 Sobic002G041100 Sobic001G243100--Sobic002G041100 Sobic002G194600 Sobic002G194600 Sobic001G243100--Sobic002G194600 Sobic001G243100--Sobic005G115600 Sobic001G443100 Sobic001G443100 Sobic001G243100--Sobic001G443100 Sobic001G243100--Sobic006G030800 Sobic005G110541--Sobic005G100800 Sobic005G110541--Sobic007G193200 Sobic005G110541--Sobic001G353200 Sobic010G187500 Sobic010G187500 Sobic005G110541--Sobic010G187500 Sobic004G261500 Sobic004G261500 Sobic005G110541--Sobic004G261500 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic005G110541--Sobic001G243100 Sobic004G299500 Sobic004G299500 Sobic005G110541--Sobic004G299500 Sobic007G136100 Sobic007G136100 Sobic010G193900--Sobic007G136100 Sobic010G002400 Sobic010G002400 Sobic010G193900--Sobic010G002400 Sobic006G176600 Sobic006G176600 Sobic010G193900--Sobic006G176600 Sobic002G294200 Sobic002G294200 Sobic010G193900--Sobic002G294200 Sobic004G173600 Sobic004G173600 Sobic010G193900--Sobic004G173600 Sobic002G114800 Sobic002G114800 Sobic010G193900--Sobic002G114800 Sobic004G081800 Sobic004G081800 Sobic010G193900--Sobic004G081800 Sobic001G283200 Sobic001G283200 Sobic010G193900--Sobic001G283200 Sobic001G049200 Sobic001G049200 Sobic010G193900--Sobic001G049200
Octagon: transcription factors


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