Gene annotation
Transcriptome id Sobic.003G208400.1
Synonym SOS3, SbCBL04, ATSOS3, calcineurin B-like proteins, Sb03g026940, CBL4
Functional annotation Cellular calcium signals (PubMedID : 19860013)
calcineurin B, putative, expressed
UniProt C4P7Y2
Pfam PF13499 PF13202
Panther DB PTHR23056 PTHR23056:SF45
NCBI CDD KOG0034; Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein
KEGG Orthology K06268; PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G24270 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os01g41510.1 : calcineurin B, putative, expressed
MaizeGDB (Corn) Zm00025a028615
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G072700 O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
2 Sobic.010G020700 expressed protein -
3 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
4 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
5 Sobic.003G316200 transmembrane protein 49, putative, expressed -
6 Sobic.006G213800 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
7 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
8 Sobic.003G087000 expressed protein -
9 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
10 Sobic.006G187100 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
11 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
12 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
13 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
14 Sobic.004G237500 hydrolase, acting on carbon-nitrogen, putative, expressed -
15 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
16 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
17 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
18 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
19 Sobic.006G215700 OsFBX172 - F-box domain containing protein, expressed -
20 Sobic.002G268800 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase


Gene co-expression network
sample Sobic003G208400 Sobic003G208400 Sobic009G072700 Sobic009G072700 Sobic003G208400--Sobic009G072700 Sobic010G020700 Sobic010G020700 Sobic003G208400--Sobic010G020700 Sobic002G008800 Sobic002G008800 Sobic003G208400--Sobic002G008800 Sobic010G064600 Sobic010G064600 Sobic003G208400--Sobic010G064600 Sobic003G316200 Sobic003G316200 Sobic003G208400--Sobic003G316200 Sobic006G213800 Sobic006G213800 Sobic003G208400--Sobic006G213800 Sobic007G205900 Sobic007G205900 Sobic003G208400--Sobic007G205900 Sobic003G087000 Sobic003G087000 Sobic003G208400--Sobic003G087000 Sobic003G338500 Sobic003G338500 Sobic003G208400--Sobic003G338500 Sobic009G072700--Sobic010G064600 Sobic006G260500 Sobic006G260500 Sobic009G072700--Sobic006G260500 Sobic005G177700 Sobic005G177700 Sobic009G072700--Sobic005G177700 Sobic008G093000 Sobic008G093000 Sobic009G072700--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic009G072700--Sobic007G075500 Sobic001G301700 Sobic001G301700 Sobic009G072700--Sobic001G301700 Sobic010G261600 Sobic010G261600 Sobic009G072700--Sobic010G261600 Sobic003G365300 Sobic003G365300 Sobic009G072700--Sobic003G365300 Sobic004G228800 Sobic004G228800 Sobic009G072700--Sobic004G228800 Sobic001G512800 Sobic001G512800 Sobic010G020700--Sobic001G512800 Sobic006G244400 Sobic006G244400 Sobic010G020700--Sobic006G244400 Sobic005G079900 Sobic005G079900 Sobic010G020700--Sobic005G079900 Sobic009G212600 Sobic009G212600 Sobic010G020700--Sobic009G212600 Sobic009G241000 Sobic009G241000 Sobic010G020700--Sobic009G241000 Sobic001G227800 Sobic001G227800 Sobic010G020700--Sobic001G227800 Sobic002G215700 Sobic002G215700 Sobic010G020700--Sobic002G215700 Sobic003G259200 Sobic003G259200 Sobic010G020700--Sobic003G259200 Sobic010G182500 Sobic010G182500 Sobic010G020700--Sobic010G182500 Sobic002G008800--Sobic010G261600 Sobic010G020400 Sobic010G020400 Sobic002G008800--Sobic010G020400 Sobic002G262900 Sobic002G262900 Sobic002G008800--Sobic002G262900 Sobic010G223300 Sobic010G223300 Sobic002G008800--Sobic010G223300 Sobic001G382600 Sobic001G382600 Sobic002G008800--Sobic001G382600 Sobic004G177300 Sobic004G177300 Sobic002G008800--Sobic004G177300 Sobic004G275700 Sobic004G275700 Sobic002G008800--Sobic004G275700 Sobic001G333100 Sobic001G333100 Sobic002G008800--Sobic001G333100 Sobic008G055900 Sobic008G055900 Sobic002G008800--Sobic008G055900 Sobic010G064600--Sobic003G087000 Sobic010G064600--Sobic008G093000 Sobic010G064600--Sobic010G261600 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic006G281800 Sobic006G281800 Sobic010G064600--Sobic006G281800 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic001G253300 Sobic001G253300 Sobic003G316200--Sobic001G253300 Sobic003G316200--Sobic005G177700 Sobic003G365100 Sobic003G365100 Sobic003G316200--Sobic003G365100 Sobic001G188400 Sobic001G188400 Sobic003G316200--Sobic001G188400 Sobic006G250800 Sobic006G250800 Sobic003G316200--Sobic006G250800 Sobic004G078700 Sobic004G078700 Sobic003G316200--Sobic004G078700 Sobic002G079000 Sobic002G079000 Sobic003G316200--Sobic002G079000 Sobic002G355800 Sobic002G355800 Sobic003G316200--Sobic002G355800 Sobic003G114400 Sobic003G114400 Sobic003G316200--Sobic003G114400 Sobic003G362500 Sobic003G362500 Sobic006G213800--Sobic003G362500 Sobic006G213800--Sobic006G281800 Sobic005G111900 Sobic005G111900 Sobic006G213800--Sobic005G111900 Sobic001G014800 Sobic001G014800 Sobic006G213800--Sobic001G014800 Sobic009G225000 Sobic009G225000 Sobic006G213800--Sobic009G225000 Sobic004G206700 Sobic004G206700 Sobic006G213800--Sobic004G206700 Sobic002G268800 Sobic002G268800 Sobic006G213800--Sobic002G268800 Sobic004G121300 Sobic004G121300 Sobic006G213800--Sobic004G121300 Sobic009G149500 Sobic009G149500 Sobic006G213800--Sobic009G149500 Sobic007G205900--Sobic010G261600 Sobic004G236200 Sobic004G236200 Sobic007G205900--Sobic004G236200 Sobic003G270600 Sobic003G270600 Sobic007G205900--Sobic003G270600 Sobic003G195500 Sobic003G195500 Sobic007G205900--Sobic003G195500 Sobic007G205900--Sobic004G228800 Sobic004G002400 Sobic004G002400 Sobic007G205900--Sobic004G002400 Sobic005G059600 Sobic005G059600 Sobic007G205900--Sobic005G059600 Sobic006G271200 Sobic006G271200 Sobic007G205900--Sobic006G271200 Sobic006G034000 Sobic006G034000 Sobic007G205900--Sobic006G034000 Sobic003G087000--Sobic010G064600 Sobic003G087000--Sobic010G261600 Sobic006G114400 Sobic006G114400 Sobic003G087000--Sobic006G114400 Sobic003G087000--Sobic008G093000 Sobic003G087000--Sobic007G075500 Sobic003G087000--Sobic009G225000 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic003G338500--Sobic010G223300 Sobic003G338500--Sobic010G261600 Sobic003G338500--Sobic010G020400 Sobic003G338500--Sobic004G275700 Sobic003G338500--Sobic008G055900 Sobic009G192000 Sobic009G192000 Sobic003G338500--Sobic009G192000 Sobic009G224000 Sobic009G224000 Sobic003G338500--Sobic009G224000 Sobic001G049400 Sobic001G049400 Sobic003G338500--Sobic001G049400 Sobic003G338500--Sobic002G008800
Octagon: transcription factors


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