Gene annotation
Transcriptome id Sobic.006G215700.1
Synonym Sb06g028580
Functional annotation OsFBX172 - F-box domain containing protein, expressed
UniProt A0A1Z5RF47
Pfam -
Panther DB PTHR32212 PTHR32212:SF102
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62230 : F-box family protein
RAP-DB (Rice) LOC_Os05g46300.1 : OsFBX172 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G215700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
2 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
3 Sobic.001G107600 - K18328: lariat debranching enzyme
4 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
5 Sobic.010G278200 expressed protein -
6 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
8 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
9 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
10 Sobic.002G111000 peptidase, putative, expressed -
11 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
12 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
13 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
14 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
15 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
16 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
17 Sobic.003G087000 expressed protein -
18 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
19 Sobic.009G225000 transmembrane protein 93, putative, expressed -
20 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -


Gene co-expression network
sample Sobic006G215700 Sobic006G215700 Sobic010G229400 Sobic010G229400 Sobic006G215700--Sobic010G229400 Sobic003G139800 Sobic003G139800 Sobic006G215700--Sobic003G139800 Sobic001G107600 Sobic001G107600 Sobic006G215700--Sobic001G107600 Sobic001G301700 Sobic001G301700 Sobic006G215700--Sobic001G301700 Sobic010G278200 Sobic010G278200 Sobic006G215700--Sobic010G278200 Sobic006G104600 Sobic006G104600 Sobic006G215700--Sobic006G104600 Sobic003G365300 Sobic003G365300 Sobic006G215700--Sobic003G365300 Sobic004G177300 Sobic004G177300 Sobic006G215700--Sobic004G177300 Sobic010G164000 Sobic010G164000 Sobic006G215700--Sobic010G164000 Sobic010G229400--Sobic003G139800 Sobic010G229400--Sobic006G215700 Sobic009G222500 Sobic009G222500 Sobic010G229400--Sobic009G222500 Sobic008G093000 Sobic008G093000 Sobic010G229400--Sobic008G093000 Sobic010G229400--Sobic010G164000 Sobic002G385900 Sobic002G385900 Sobic010G229400--Sobic002G385900 Sobic010G000900 Sobic010G000900 Sobic010G229400--Sobic010G000900 Sobic002G166900 Sobic002G166900 Sobic010G229400--Sobic002G166900 Sobic001G199100 Sobic001G199100 Sobic010G229400--Sobic001G199100 Sobic001G390800 Sobic001G390800 Sobic003G139800--Sobic001G390800 Sobic003G139800--Sobic010G229400 Sobic001G268200 Sobic001G268200 Sobic003G139800--Sobic001G268200 Sobic010G147100 Sobic010G147100 Sobic003G139800--Sobic010G147100 Sobic002G311100 Sobic002G311100 Sobic003G139800--Sobic002G311100 Sobic001G113500 Sobic001G113500 Sobic003G139800--Sobic001G113500 Sobic010G139600 Sobic010G139600 Sobic003G139800--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic003G139800--Sobic002G111000 Sobic010G131900 Sobic010G131900 Sobic003G139800--Sobic010G131900 Sobic001G050200 Sobic001G050200 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G107600--Sobic001G390800 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic001G438600 Sobic001G438600 Sobic001G301700--Sobic001G438600 Sobic001G207400 Sobic001G207400 Sobic001G301700--Sobic001G207400 Sobic001G015500 Sobic001G015500 Sobic001G301700--Sobic001G015500 Sobic002G266000 Sobic002G266000 Sobic001G301700--Sobic002G266000 Sobic001G301700--Sobic008G093000 Sobic002G270500 Sobic002G270500 Sobic001G301700--Sobic002G270500 Sobic002G430000 Sobic002G430000 Sobic001G301700--Sobic002G430000 Sobic001G301700--Sobic002G111000 Sobic010G205200 Sobic010G205200 Sobic001G301700--Sobic010G205200 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic001G282600 Sobic001G282600 Sobic006G104600--Sobic001G282600 Sobic006G104600--Sobic002G266000 Sobic003G320700 Sobic003G320700 Sobic006G104600--Sobic003G320700 Sobic001G305500 Sobic001G305500 Sobic006G104600--Sobic001G305500 Sobic002G128200 Sobic002G128200 Sobic006G104600--Sobic002G128200 Sobic003G322700 Sobic003G322700 Sobic006G104600--Sobic003G322700 Sobic006G199000 Sobic006G199000 Sobic006G104600--Sobic006G199000 Sobic005G149700 Sobic005G149700 Sobic006G104600--Sobic005G149700 Sobic004G225200 Sobic004G225200 Sobic006G104600--Sobic004G225200 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic009G068500 Sobic009G068500 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic003G365300--Sobic001G107600 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic003G089000 Sobic003G089000 Sobic004G177300--Sobic003G089000 Sobic002G262900 Sobic002G262900 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic010G261600 Sobic010G261600 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic010G164000--Sobic002G262900 Sobic001G085100 Sobic001G085100 Sobic010G164000--Sobic001G085100 Sobic010G164000--Sobic010G000900 Sobic010G164000--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic010G164000--Sobic004G066200 Sobic001G121200 Sobic001G121200 Sobic010G164000--Sobic001G121200 Sobic001G091300 Sobic001G091300 Sobic010G164000--Sobic001G091300 Sobic009G228700 Sobic009G228700 Sobic010G164000--Sobic009G228700 Sobic010G164000--Sobic010G261600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.