Gene annotation
Transcriptome id Sobic.003G232400.1
Synonym Sb03g029020
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
hydrolase, alpha/beta fold family domain containing protein, expressed
UniProt C5XEI5
Pfam PF00561
Panther DB PTHR10992 PTHR10992:SF782
NCBI CDD KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G18360 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g44960.1 : hydrolase, alpha/beta fold family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028302 , Zm00025a046853
Brachypodium PNT65132 , KQK08890
Barley HORVU3Hr1G056330.12 , HORVU3Hr1G056330.13 , HORVU3Hr1G056330.10 , HORVU3Hr1G056330.11 , HORVU3Hr1G103960.1 , HORVU3Hr1G103960.2 , HORVU3Hr1G056330.8 , HORVU3Hr1G056330.9 , HORVU3Hr1G056330.1 , HORVU3Hr1G056330.2 , HORVU3Hr1G056330.3 , HORVU3Hr1G056330.4 , HORVU3Hr1G056330.5 , HORVU3Hr1G056330.6 , HORVU3Hr1G056330.7
Wheat TraesCS3B02G520700 , TraesCS3A02G226000 , TraesCS3B02G258500 , TraesCS3D02G471200 , TraesCS3A02G476700 , TraesCS3D02G224000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111000 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
2 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
3 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
4 Sobic.007G150800 expressed protein -
5 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
6 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
7 Sobic.006G278100 expressed protein -
8 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
9 Sobic.002G128800 fiber protein Fb34, putative, expressed -
10 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
11 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
12 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.004G344500 tubulin-specific chaperone A, putative, expressed K17292: tubulin-specific chaperone A
14 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
15 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
16 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
18 Sobic.002G258300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4


Gene co-expression network
sample Sobic003G232400 Sobic003G232400 Sobic001G111000 Sobic001G111000 Sobic003G232400--Sobic001G111000 Sobic006G057200 Sobic006G057200 Sobic003G232400--Sobic006G057200 Sobic002G385400 Sobic002G385400 Sobic003G232400--Sobic002G385400 Sobic007G150800 Sobic007G150800 Sobic003G232400--Sobic007G150800 Sobic009G232100 Sobic009G232100 Sobic003G232400--Sobic009G232100 Sobic010G070500 Sobic010G070500 Sobic003G232400--Sobic010G070500 Sobic006G278100 Sobic006G278100 Sobic003G232400--Sobic006G278100 Sobic009G173500 Sobic009G173500 Sobic003G232400--Sobic009G173500 Sobic002G128800 Sobic002G128800 Sobic003G232400--Sobic002G128800 Sobic001G111000--Sobic006G057200 Sobic003G016100 Sobic003G016100 Sobic001G111000--Sobic003G016100 Sobic004G042000 Sobic004G042000 Sobic001G111000--Sobic004G042000 Sobic001G361600 Sobic001G361600 Sobic001G111000--Sobic001G361600 Sobic003G219800 Sobic003G219800 Sobic001G111000--Sobic003G219800 Sobic005G142300 Sobic005G142300 Sobic001G111000--Sobic005G142300 Sobic003G264600 Sobic003G264600 Sobic001G111000--Sobic003G264600 Sobic003G160700 Sobic003G160700 Sobic001G111000--Sobic003G160700 Sobic003G078200 Sobic003G078200 Sobic001G111000--Sobic003G078200 Sobic002G179300 Sobic002G179300 Sobic006G057200--Sobic002G179300 Sobic007G178600 Sobic007G178600 Sobic006G057200--Sobic007G178600 Sobic010G069400 Sobic010G069400 Sobic006G057200--Sobic010G069400 Sobic004G008400 Sobic004G008400 Sobic006G057200--Sobic004G008400 Sobic004G244800 Sobic004G244800 Sobic006G057200--Sobic004G244800 Sobic006G057200--Sobic010G070500 Sobic001G508900 Sobic001G508900 Sobic006G057200--Sobic001G508900 Sobic002G286900 Sobic002G286900 Sobic006G057200--Sobic002G286900 Sobic006G057200--Sobic003G078200 Sobic004G217450 Sobic004G217450 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G258300 Sobic002G258300 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic003G084300 Sobic003G084300 Sobic002G385400--Sobic003G084300 Sobic005G080900 Sobic005G080900 Sobic002G385400--Sobic005G080900 Sobic003G034600 Sobic003G034600 Sobic002G385400--Sobic003G034600 Sobic004G274900 Sobic004G274900 Sobic002G385400--Sobic004G274900 Sobic006G115000 Sobic006G115000 Sobic002G385400--Sobic006G115000 Sobic001G475500 Sobic001G475500 Sobic007G150800--Sobic001G475500 Sobic007G150800--Sobic002G128800 Sobic007G150800--Sobic010G070500 Sobic007G150800--Sobic006G278100 Sobic009G212200 Sobic009G212200 Sobic007G150800--Sobic009G212200 Sobic001G444800 Sobic001G444800 Sobic007G150800--Sobic001G444800 Sobic003G122200 Sobic003G122200 Sobic007G150800--Sobic003G122200 Sobic007G150800--Sobic009G173500 Sobic003G011100 Sobic003G011100 Sobic007G150800--Sobic003G011100 Sobic009G088900 Sobic009G088900 Sobic009G232100--Sobic009G088900 Sobic001G049900 Sobic001G049900 Sobic009G232100--Sobic001G049900 Sobic009G188000 Sobic009G188000 Sobic009G232100--Sobic009G188000 Sobic001G310300 Sobic001G310300 Sobic009G232100--Sobic001G310300 Sobic010G085800 Sobic010G085800 Sobic009G232100--Sobic010G085800 Sobic009G232100--Sobic001G361600 Sobic002G396400 Sobic002G396400 Sobic009G232100--Sobic002G396400 Sobic001G304100 Sobic001G304100 Sobic009G232100--Sobic001G304100 Sobic009G109000 Sobic009G109000 Sobic009G232100--Sobic009G109000 Sobic001G226500 Sobic001G226500 Sobic010G070500--Sobic001G226500 Sobic010G070500--Sobic004G008400 Sobic008G108601 Sobic008G108601 Sobic010G070500--Sobic008G108601 Sobic010G251600 Sobic010G251600 Sobic010G070500--Sobic010G251600 Sobic004G055100 Sobic004G055100 Sobic010G070500--Sobic004G055100 Sobic010G070500--Sobic002G179300 Sobic010G070500--Sobic002G286900 Sobic010G070500--Sobic003G078200 Sobic003G249700 Sobic003G249700 Sobic010G070500--Sobic003G249700 Sobic006G278100--Sobic007G150800 Sobic001G107100 Sobic001G107100 Sobic006G278100--Sobic001G107100 Sobic006G278100--Sobic002G128800 Sobic003G250700 Sobic003G250700 Sobic006G278100--Sobic003G250700 Sobic009G232200 Sobic009G232200 Sobic006G278100--Sobic009G232200 Sobic002G338400 Sobic002G338400 Sobic006G278100--Sobic002G338400 Sobic006G278100--Sobic003G122200 Sobic006G191700 Sobic006G191700 Sobic006G278100--Sobic006G191700 Sobic001G261549 Sobic001G261549 Sobic006G278100--Sobic001G261549 Sobic001G039400 Sobic001G039400 Sobic009G173500--Sobic001G039400 Sobic009G173500--Sobic001G226500 Sobic009G233400 Sobic009G233400 Sobic009G173500--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic009G173500--Sobic009G223300 Sobic003G109600 Sobic003G109600 Sobic009G173500--Sobic003G109600 Sobic009G173500--Sobic003G078200 Sobic009G173500--Sobic003G249700 Sobic009G179100 Sobic009G179100 Sobic009G173500--Sobic009G179100 Sobic009G173500--Sobic010G070500 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic002G128800--Sobic007G150800 Sobic001G418100 Sobic001G418100 Sobic002G128800--Sobic001G418100 Sobic002G128800--Sobic002G396400 Sobic002G128800--Sobic001G475500 Sobic010G052200 Sobic010G052200 Sobic002G128800--Sobic010G052200 Sobic006G156000 Sobic006G156000 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic003G443300 Sobic003G443300 Sobic002G128800--Sobic003G443300
Octagon: transcription factors


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