Gene annotation
Transcriptome id Sobic.003G260000.1
Synonym AT5MAT, Sb03g031400
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transferase family protein, putative, expressed
UniProt C5XGS9
Pfam PF02458
Panther DB PTHR31625 PTHR31625:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT3G29670 : HXXXD-type acyl-transferase family protein
RAP-DB (Rice) LOC_Os02g28300.1 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018208 , Zm00025a005557
Brachypodium KQJ96412
Barley HORVU4Hr1G009300.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G260000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028600 expressed protein -
2 Sobic.008G061500 receptor kinase, putative, expressed -
3 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
4 Sobic.010G248200 KID-containing protein, putative, expressed -
5 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
6 Sobic.004G082500 OsFBA1 - F-box and FBA domain containing protein, expressed -
7 Sobic.008G161401 - -
8 Sobic.006G124900 MA3 domain containing protein, expressed -
9 Sobic.004G212800 - -
10 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
11 Sobic.010G146700 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
12 Sobic.002G203200 - -
13 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
14 Sobic.002G402366 - -
15 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
16 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
17 Sobic.005G130200 - -
18 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
19 Sobic.010G124001 - -
20 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G260000 Sobic003G260000 Sobic001G028600 Sobic001G028600 Sobic003G260000--Sobic001G028600 Sobic008G061500 Sobic008G061500 Sobic003G260000--Sobic008G061500 Sobic009G156000 Sobic009G156000 Sobic003G260000--Sobic009G156000 Sobic010G248200 Sobic010G248200 Sobic003G260000--Sobic010G248200 Sobic010G001600 Sobic010G001600 Sobic003G260000--Sobic010G001600 Sobic004G082500 Sobic004G082500 Sobic003G260000--Sobic004G082500 Sobic008G161401 Sobic008G161401 Sobic003G260000--Sobic008G161401 Sobic006G124900 Sobic006G124900 Sobic003G260000--Sobic006G124900 Sobic004G212800 Sobic004G212800 Sobic003G260000--Sobic004G212800 Sobic002G007250 Sobic002G007250 Sobic001G028600--Sobic002G007250 Sobic001G028600--Sobic004G212800 Sobic002G108800 Sobic002G108800 Sobic001G028600--Sobic002G108800 Sobic002G285200 Sobic002G285200 Sobic001G028600--Sobic002G285200 Sobic001G345333 Sobic001G345333 Sobic001G028600--Sobic001G345333 Sobic007G156500 Sobic007G156500 Sobic001G028600--Sobic007G156500 Sobic001G028600--Sobic010G248200 Sobic002G253500 Sobic002G253500 Sobic001G028600--Sobic002G253500 Sobic001G028600--Sobic008G161401 Sobic008G061500--Sobic010G248200 Sobic008G061500--Sobic002G007250 Sobic008G061500--Sobic001G345333 Sobic001G128800 Sobic001G128800 Sobic008G061500--Sobic001G128800 Sobic008G042250 Sobic008G042250 Sobic008G061500--Sobic008G042250 Sobic008G157950 Sobic008G157950 Sobic008G061500--Sobic008G157950 Sobic005G130200 Sobic005G130200 Sobic008G061500--Sobic005G130200 Sobic008G061500--Sobic004G212800 Sobic001G287301 Sobic001G287301 Sobic008G061500--Sobic001G287301 Sobic002G283300 Sobic002G283300 Sobic009G156000--Sobic002G283300 Sobic005G028400 Sobic005G028400 Sobic009G156000--Sobic005G028400 Sobic003G093600 Sobic003G093600 Sobic009G156000--Sobic003G093600 Sobic009G156000--Sobic008G161401 Sobic009G156000--Sobic005G130200 Sobic002G165300 Sobic002G165300 Sobic009G156000--Sobic002G165300 Sobic001G479500 Sobic001G479500 Sobic009G156000--Sobic001G479500 Sobic009G156000--Sobic010G248200 Sobic004G143700 Sobic004G143700 Sobic009G156000--Sobic004G143700 Sobic010G248200--Sobic002G007250 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic002G313300 Sobic002G313300 Sobic004G082500--Sobic002G313300 Sobic004G082500--Sobic006G124900 Sobic004G082500--Sobic005G177800 Sobic001G192900 Sobic001G192900 Sobic004G082500--Sobic001G192900 Sobic002G001600 Sobic002G001600 Sobic004G082500--Sobic002G001600 Sobic004G082500--Sobic005G130200 Sobic001G543900 Sobic001G543900 Sobic004G082500--Sobic001G543900 Sobic004G196700 Sobic004G196700 Sobic004G082500--Sobic004G196700 Sobic007G078000 Sobic007G078000 Sobic004G082500--Sobic007G078000 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic007G073400 Sobic007G073400 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic003G057800 Sobic003G057800 Sobic008G161401--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic008G161401--Sobic003G357500 Sobic008G161401--Sobic009G156000 Sobic008G161401--Sobic002G108800 Sobic008G161401--Sobic001G479500 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic007G130600 Sobic007G130600 Sobic006G124900--Sobic007G130600 Sobic006G124900--Sobic002G300400 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic001G024200 Sobic001G024200 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.