Gene annotation
| Transcriptome id | Sobic.003G271800.1,Sobic.003G271800.2 |
|---|---|
| Synonym | Sb03g032380 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under drought (PubMedID : 24916767) late embryogenesis abundant protein, group 3, putative, expressed |
| UniProt | A0A1B6Q5M0 , A0A1B6Q5L7 |
| Pfam | - |
| Panther DB | PTHR23241 PTHR23241:SF44 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G15670 : Late embryogenesis abundant protein (LEA) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g50910.1 : late embryogenesis abundant protein, group 3, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027852 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G271800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G236551 | - | - |
| 2 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 3 | Sobic.004G142500 | Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 4 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 5 | Sobic.001G404300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@RPGR, putative, expressed | - |
| 6 | Sobic.001G396900 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 7 | Sobic.002G413200 | glucosyltransferase, putative, expressed | - |
| 8 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 9 | Sobic.005G138500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 11 | Sobic.004G195900 | late embryogenesis abundant protein D-34, putative, expressed | - |
| 12 | Sobic.002G143300 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 13 | Sobic.006G269501 | - | - |
| 14 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
| 15 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 16 | Sobic.001G044300 | transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 17 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 18 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 19 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 20 | Sobic.003G236200 | oleosin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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