Gene annotation
Transcriptome id Sobic.003G321101.1
Synonym -
Functional annotation -
UniProt A0A1W0W005
Pfam PF02136
Panther DB PTHR12612 PTHR12612:SF10
NCBI CDD KOG2104; Nuclear transport factor 2
KEGG Orthology -
Gene Ontology GO:0006810; transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G27970 : nuclear transport factor 2B
RAP-DB (Rice) LOC_Os08g42000.1 : nuclear transport factor, putative, expressed
MaizeGDB (Corn) Zm00025a027245
Brachypodium KQK10125
Barley HORVU3Hr1G077660.3 , HORVU3Hr1G077660.1
Wheat TraesCS3D02G318700 , TraesCS3B02G354200 , TraesCS3A02G325400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G235100 expressed protein -
2 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
3 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
4 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
5 Sobic.010G225251 - -
6 Sobic.010G082600 EF hand family protein, putative, expressed -
7 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
8 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
9 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
10 Sobic.001G313600 heavy metal-associated domain containing protein, expressed -
11 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
12 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
13 Sobic.001G310600 expressed protein -
14 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
15 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
16 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
18 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.008G066401 - -
20 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G321101 Sobic003G321101 Sobic006G235100 Sobic006G235100 Sobic003G321101--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic003G321101--Sobic001G502400 Sobic009G184000 Sobic009G184000 Sobic003G321101--Sobic009G184000 Sobic006G007900 Sobic006G007900 Sobic003G321101--Sobic006G007900 Sobic010G225251 Sobic010G225251 Sobic003G321101--Sobic010G225251 Sobic010G082600 Sobic010G082600 Sobic003G321101--Sobic010G082600 Sobic001G259900 Sobic001G259900 Sobic003G321101--Sobic001G259900 Sobic003G442100 Sobic003G442100 Sobic003G321101--Sobic003G442100 Sobic003G432700 Sobic003G432700 Sobic003G321101--Sobic003G432700 Sobic006G235100--Sobic001G502400 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G075400 Sobic006G075400 Sobic006G235100--Sobic006G075400 Sobic006G235100--Sobic003G432700 Sobic001G502400--Sobic005G107900 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic001G502400--Sobic006G007900 Sobic001G112200 Sobic001G112200 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic007G122800 Sobic007G122800 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic006G007900--Sobic008G066401 Sobic006G007900--Sobic001G502400 Sobic005G086600 Sobic005G086600 Sobic006G007900--Sobic005G086600 Sobic010G225251--Sobic001G112200 Sobic004G336500 Sobic004G336500 Sobic010G225251--Sobic004G336500 Sobic001G310600 Sobic001G310600 Sobic010G225251--Sobic001G310600 Sobic009G069800 Sobic009G069800 Sobic010G225251--Sobic009G069800 Sobic010G225251--Sobic001G138600 Sobic010G225251--Sobic009G184000 Sobic002G389400 Sobic002G389400 Sobic010G225251--Sobic002G389400 Sobic004G109900 Sobic004G109900 Sobic010G225251--Sobic004G109900 Sobic010G225251--Sobic007G169700 Sobic010G082600--Sobic004G141100 Sobic006G008000 Sobic006G008000 Sobic010G082600--Sobic006G008000 Sobic010G082600--Sobic006G235100 Sobic010G082600--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic010G082600--Sobic009G145700 Sobic003G426600 Sobic003G426600 Sobic010G082600--Sobic003G426600 Sobic010G082600--Sobic002G189100 Sobic002G012500 Sobic002G012500 Sobic010G082600--Sobic002G012500 Sobic003G043600 Sobic003G043600 Sobic010G082600--Sobic003G043600 Sobic001G259900--Sobic003G442100 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic001G259900--Sobic009G184000 Sobic001G259900--Sobic006G235100 Sobic004G191400 Sobic004G191400 Sobic001G259900--Sobic004G191400 Sobic001G259900--Sobic001G310600 Sobic001G079300 Sobic001G079300 Sobic001G259900--Sobic001G079300 Sobic003G268600 Sobic003G268600 Sobic003G442100--Sobic003G268600 Sobic003G442100--Sobic001G310600 Sobic003G442100--Sobic003G043600 Sobic003G442100--Sobic006G235100 Sobic003G442100--Sobic001G259900 Sobic003G442100--Sobic006G007900 Sobic003G442100--Sobic004G191400 Sobic003G442100--Sobic006G075400 Sobic003G442100--Sobic005G086600 Sobic003G432700--Sobic005G107900 Sobic003G432700--Sobic001G502400 Sobic003G432700--Sobic003G228900 Sobic003G432700--Sobic005G011300 Sobic003G432700--Sobic001G313600 Sobic003G432700--Sobic009G184000 Sobic003G432700--Sobic006G075400 Sobic001G169500 Sobic001G169500 Sobic003G432700--Sobic001G169500 Sobic003G432700--Sobic007G169700
Octagon: transcription factors


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