Gene annotation
| Transcriptome id | Sobic.003G329500.2,Sobic.003G329500.1 |
|---|---|
| Synonym | Sb03g037560, TGA2, AHBP-1B |
| Functional annotation | transcription factor, putative, expressed |
| UniProt | C5XMK2 |
| Pfam | PF00170 PF14144 |
| Panther DB | PTHR22952 PTHR22952:SF183 |
| NCBI CDD | - |
| KEGG Orthology | K14431; transcription factor TGA |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0006351transcription, DNA-templated |
Orthologs (automatic annotation)
| TAIR | AT3G12250 : TGACG motif-binding factor 6 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g59350.1 : transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a039823 , Zm00025a027151 |
| Brachypodium | KQK10238 |
| Barley | HORVU3Hr1G079010.8 , HORVU3Hr1G079010.2 , HORVU3Hr1G079010.3 , HORVU3Hr1G079010.6 , HORVU3Hr1G079010.7 , HORVU3Hr1G079010.4 , HORVU3Hr1G079010.5 , HORVU3Hr1G079010.18 , HORVU3Hr1G079010.19 , HORVU3Hr1G079010.11 , HORVU3Hr1G079010.13 , HORVU3Hr1G079010.14 , HORVU3Hr1G079010.15 , HORVU3Hr1G079010.16 , HORVU3Hr1G079010.17 , HORVU3Hr1G079010.20 , HORVU3Hr1G079010.23 , HORVU3Hr1G079010.22 |
| Wheat | TraesCS3A02G334100 , TraesCS3D02G327600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G011800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed | K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase |
| 2 | Sobic.005G105600 | stripe rust resistance protein Yr10, putative, expressed | K13457: RPM1, disease resistance protein RPM1 |
| 3 | Sobic.004G347500 | 2-phosphoglycerate kinase-related, putative, expressed | - |
| 4 | Sobic.004G029900 | "transporter for metal ion into cytoplasm, an influx transporter for Al"(PubMedID : 28716414)@metal transporter Nramp6, putative, expressed | - |
| 5 | Sobic.006G013300 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 6 | Sobic.004G329600 | SMP-30/Gluconolaconase/LRE-like region containing protein, expressed | - |
| 7 | Sobic.002G177600 | expressed protein | - |
| 8 | Sobic.001G386600 | homeobox domain containing protein, expressed | - |
| 9 | Sobic.009G208600 | POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 10 | Sobic.008G102532 | - | K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 |
| 11 | Sobic.003G395200 | AML1, putative, expressed | - |
| 12 | Sobic.006G124200 | expressed protein | - |
| 13 | Sobic.003G281100 | B3 DNA binding domain containing protein, expressed | - |
| 14 | Sobic.001G197800 | - | - |
| 15 | Sobic.007G191500 | - | - |
| 16 | Sobic.006G095900 | OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed | K16296: serine carboxypeptidase-like clade I |
| 17 | Sobic.002G230900 | cyclin, putative, expressed | K18810: cyclin D1/2/4, plant |
| 18 | Sobic.002G394900 | gibberellin receptor GID1L2, putative, expressed | - |
| 19 | Sobic.009G102400 | "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 20 | Sobic.005G021000 | AP2 domain containing protein, expressed | K09285: OVM, AP2-like factor, ANT lineage |
Gene co-expression network
Octagon: transcription factors
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