Gene annotation
Transcriptome id Sobic.003G333200.1
Synonym OTP85, Sb03g037820
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W052
Pfam PF01535 PF14432 PF13041
Panther DB PTHR24015 PTHR24015:SF838
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02980 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g59890.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a027114
Brachypodium PNT73091 , KQK10279
Barley HORVU3Hr1G079860.6 , HORVU3Hr1G079860.3 , HORVU3Hr1G079860.2 , HORVU3Hr1G079860.1 , HORVU3Hr1G079860.7 , HORVU3Hr1G079860.5 , HORVU3Hr1G079860.4
Wheat TraesCS3B02G369900 , TraesCS3B02G369900 , TraesCS3A02G338300 , TraesCS3D02G331800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G037200 - -
2 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.010G134650 - -
4 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
5 Sobic.002G362500 expressed protein -
6 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
8 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
9 Sobic.010G173300 - -
10 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
11 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
12 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
14 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
15 Sobic.002G102300 - -
16 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
17 Sobic.003G342500 methyltransferase, putative, expressed -
18 Sobic.002G054200 Rf1, mitochondrial precursor, putative, expressed -
19 Sobic.008G022400 EMB2748, putative, expressed -
20 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''


Gene co-expression network
sample Sobic003G333200 Sobic003G333200 Sobic002G037200 Sobic002G037200 Sobic003G333200--Sobic002G037200 Sobic002G414800 Sobic002G414800 Sobic003G333200--Sobic002G414800 Sobic010G134650 Sobic010G134650 Sobic003G333200--Sobic010G134650 Sobic003G235100 Sobic003G235100 Sobic003G333200--Sobic003G235100 Sobic002G362500 Sobic002G362500 Sobic003G333200--Sobic002G362500 Sobic004G140400 Sobic004G140400 Sobic003G333200--Sobic004G140400 Sobic006G156400 Sobic006G156400 Sobic003G333200--Sobic006G156400 Sobic009G046900 Sobic009G046900 Sobic003G333200--Sobic009G046900 Sobic010G173300 Sobic010G173300 Sobic003G333200--Sobic010G173300 Sobic010G086300 Sobic010G086300 Sobic002G037200--Sobic010G086300 Sobic002G037200--Sobic003G333200 Sobic008G022400 Sobic008G022400 Sobic002G037200--Sobic008G022400 Sobic006G134500 Sobic006G134500 Sobic002G037200--Sobic006G134500 Sobic003G358600 Sobic003G358600 Sobic002G037200--Sobic003G358600 Sobic010G277700 Sobic010G277700 Sobic002G037200--Sobic010G277700 Sobic002G037200--Sobic010G134650 Sobic002G037200--Sobic009G046900 Sobic001G149000 Sobic001G149000 Sobic002G037200--Sobic001G149000 Sobic001G384200 Sobic001G384200 Sobic002G414800--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic002G414800--Sobic008G166100 Sobic001G280500 Sobic001G280500 Sobic002G414800--Sobic001G280500 Sobic006G265800 Sobic006G265800 Sobic002G414800--Sobic006G265800 Sobic002G414800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic001G387300 Sobic001G387300 Sobic002G414800--Sobic001G387300 Sobic002G414800--Sobic002G362500 Sobic006G071362 Sobic006G071362 Sobic010G134650--Sobic006G071362 Sobic001G257800 Sobic001G257800 Sobic010G134650--Sobic001G257800 Sobic003G385300 Sobic003G385300 Sobic010G134650--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic010G134650--Sobic007G039200 Sobic010G134650--Sobic009G046900 Sobic008G159701 Sobic008G159701 Sobic010G134650--Sobic008G159701 Sobic003G236000 Sobic003G236000 Sobic010G134650--Sobic003G236000 Sobic006G117700 Sobic006G117700 Sobic010G134650--Sobic006G117700 Sobic010G202200 Sobic010G202200 Sobic010G134650--Sobic010G202200 Sobic003G235100--Sobic009G046900 Sobic007G004300 Sobic007G004300 Sobic003G235100--Sobic007G004300 Sobic009G116900 Sobic009G116900 Sobic003G235100--Sobic009G116900 Sobic002G084800 Sobic002G084800 Sobic003G235100--Sobic002G084800 Sobic005G145201 Sobic005G145201 Sobic003G235100--Sobic005G145201 Sobic008G152700 Sobic008G152700 Sobic003G235100--Sobic008G152700 Sobic003G402800 Sobic003G402800 Sobic003G235100--Sobic003G402800 Sobic004G350700 Sobic004G350700 Sobic003G235100--Sobic004G350700 Sobic004G107100 Sobic004G107100 Sobic003G235100--Sobic004G107100 Sobic001G322400 Sobic001G322400 Sobic002G362500--Sobic001G322400 Sobic001G072000 Sobic001G072000 Sobic002G362500--Sobic001G072000 Sobic009G201000 Sobic009G201000 Sobic002G362500--Sobic009G201000 Sobic002G362500--Sobic008G166100 Sobic002G362500--Sobic007G039200 Sobic009G163100 Sobic009G163100 Sobic002G362500--Sobic009G163100 Sobic004G113600 Sobic004G113600 Sobic002G362500--Sobic004G113600 Sobic002G362500--Sobic001G387300 Sobic004G074900 Sobic004G074900 Sobic002G362500--Sobic004G074900 Sobic002G102300 Sobic002G102300 Sobic004G140400--Sobic002G102300 Sobic005G225500 Sobic005G225500 Sobic004G140400--Sobic005G225500 Sobic007G101600 Sobic007G101600 Sobic004G140400--Sobic007G101600 Sobic004G140400--Sobic008G159701 Sobic002G304801 Sobic002G304801 Sobic004G140400--Sobic002G304801 Sobic004G140400--Sobic010G202200 Sobic001G286900 Sobic001G286900 Sobic004G140400--Sobic001G286900 Sobic003G238250 Sobic003G238250 Sobic004G140400--Sobic003G238250 Sobic002G257001 Sobic002G257001 Sobic004G140400--Sobic002G257001 Sobic006G156400--Sobic009G201000 Sobic008G141100 Sobic008G141100 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500 Sobic009G046900--Sobic001G149000 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic009G046900--Sobic006G134500 Sobic002G074800 Sobic002G074800 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic009G046900--Sobic003G358600 Sobic010G173300--Sobic004G107100 Sobic006G150300 Sobic006G150300 Sobic010G173300--Sobic006G150300 Sobic006G267100 Sobic006G267100 Sobic010G173300--Sobic006G267100 Sobic003G244400 Sobic003G244400 Sobic010G173300--Sobic003G244400 Sobic010G173300--Sobic007G039200 Sobic010G173300--Sobic009G202000 Sobic010G173300--Sobic004G113600 Sobic004G180100 Sobic004G180100 Sobic010G173300--Sobic004G180100 Sobic002G170100 Sobic002G170100 Sobic010G173300--Sobic002G170100
Octagon: transcription factors


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