Gene annotation
Transcriptome id Sobic.003G336100.1,Sobic.003G336100.2
Synonym Sb03g038030
Functional annotation auxin efflux carrier component, putative, expressed
UniProt C5XN85
Pfam PF03547
Panther DB PTHR31419 PTHR31419:SF1
NCBI CDD KOG2722; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G01990 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os01g60230.1,LOC_Os01g60230.4 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a027081
Brachypodium KQK10321 , KQK10323 , KQK10322 , KQK10325 , KQK10324
Barley HORVU3Hr1G080640.13 , HORVU3Hr1G080640.12 , HORVU3Hr1G080640.11 , HORVU3Hr1G080640.10 , HORVU3Hr1G080640.14 , HORVU3Hr1G080640.7 , HORVU3Hr1G080640.5 , HORVU3Hr1G080640.9
Wheat TraesCS3D02G335100 , TraesCS3A02G341400 , TraesCS3B02G373500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G336100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G196900 expressed protein -
2 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.004G124500 transporter family protein, putative, expressed -
4 Sobic.003G272400 DUF292 domain containing protein, expressed -
5 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
6 Sobic.006G207900 DNA binding protein, putative, expressed -
7 Sobic.003G198150 - -
8 Sobic.003G229000 cytochrome P450 72A1, putative, expressed -
9 Sobic.010G165300 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
10 Sobic.009G130900 "oxidoreductase, 2OG-Fe(II) oxygenase family protein"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
12 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
13 Sobic.008G123500 auxilin, putative, expressed -
14 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
15 Sobic.003G252500 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
16 Sobic.001G110900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.002G387200 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.010G072500 - -
19 Sobic.006G068350 - -
20 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G336100 Sobic003G336100 Sobic007G196900 Sobic007G196900 Sobic003G336100--Sobic007G196900 Sobic003G198200 Sobic003G198200 Sobic003G336100--Sobic003G198200 Sobic004G124500 Sobic004G124500 Sobic003G336100--Sobic004G124500 Sobic003G272400 Sobic003G272400 Sobic003G336100--Sobic003G272400 Sobic005G121200 Sobic005G121200 Sobic003G336100--Sobic005G121200 Sobic006G207900 Sobic006G207900 Sobic003G336100--Sobic006G207900 Sobic003G198150 Sobic003G198150 Sobic003G336100--Sobic003G198150 Sobic003G229000 Sobic003G229000 Sobic003G336100--Sobic003G229000 Sobic010G165300 Sobic010G165300 Sobic003G336100--Sobic010G165300 Sobic001G477700 Sobic001G477700 Sobic007G196900--Sobic001G477700 Sobic008G123500 Sobic008G123500 Sobic007G196900--Sobic008G123500 Sobic001G095500 Sobic001G095500 Sobic007G196900--Sobic001G095500 Sobic010G093100 Sobic010G093100 Sobic007G196900--Sobic010G093100 Sobic002G306000 Sobic002G306000 Sobic007G196900--Sobic002G306000 Sobic001G538700 Sobic001G538700 Sobic007G196900--Sobic001G538700 Sobic004G353600 Sobic004G353600 Sobic007G196900--Sobic004G353600 Sobic001G251200 Sobic001G251200 Sobic007G196900--Sobic001G251200 Sobic001G096000 Sobic001G096000 Sobic007G196900--Sobic001G096000 Sobic003G198200--Sobic003G198150 Sobic004G170032 Sobic004G170032 Sobic003G198200--Sobic004G170032 Sobic001G450800 Sobic001G450800 Sobic003G198200--Sobic001G450800 Sobic002G148700 Sobic002G148700 Sobic003G198200--Sobic002G148700 Sobic003G227600 Sobic003G227600 Sobic003G198200--Sobic003G227600 Sobic004G337900 Sobic004G337900 Sobic003G198200--Sobic004G337900 Sobic008G029300 Sobic008G029300 Sobic003G198200--Sobic008G029300 Sobic003G198200--Sobic004G353600 Sobic002G387200 Sobic002G387200 Sobic003G198200--Sobic002G387200 Sobic007G056600 Sobic007G056600 Sobic004G124500--Sobic007G056600 Sobic007G180600 Sobic007G180600 Sobic004G124500--Sobic007G180600 Sobic003G269800 Sobic003G269800 Sobic004G124500--Sobic003G269800 Sobic004G100200 Sobic004G100200 Sobic004G124500--Sobic004G100200 Sobic003G043800 Sobic003G043800 Sobic004G124500--Sobic003G043800 Sobic004G228800 Sobic004G228800 Sobic004G124500--Sobic004G228800 Sobic004G207900 Sobic004G207900 Sobic004G124500--Sobic004G207900 Sobic009G099200 Sobic009G099200 Sobic004G124500--Sobic009G099200 Sobic004G236200 Sobic004G236200 Sobic004G124500--Sobic004G236200 Sobic003G272400--Sobic004G353600 Sobic003G281900 Sobic003G281900 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic003G272400--Sobic002G306000 Sobic010G260300 Sobic010G260300 Sobic003G272400--Sobic010G260300 Sobic003G126300 Sobic003G126300 Sobic003G272400--Sobic003G126300 Sobic003G272400--Sobic006G207900 Sobic001G110900 Sobic001G110900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic001G127800 Sobic001G127800 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic002G337800 Sobic002G337800 Sobic005G121200--Sobic002G337800 Sobic003G278700 Sobic003G278700 Sobic005G121200--Sobic003G278700 Sobic009G030200 Sobic009G030200 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic005G121200--Sobic003G198200 Sobic007G152800 Sobic007G152800 Sobic005G121200--Sobic007G152800 Sobic005G121200--Sobic003G198150 Sobic006G217300 Sobic006G217300 Sobic006G207900--Sobic006G217300 Sobic009G169400 Sobic009G169400 Sobic006G207900--Sobic009G169400 Sobic006G207900--Sobic003G272400 Sobic006G207900--Sobic003G043800 Sobic006G207900--Sobic003G126300 Sobic001G312500 Sobic001G312500 Sobic006G207900--Sobic001G312500 Sobic006G207900--Sobic004G207900 Sobic001G122500 Sobic001G122500 Sobic006G207900--Sobic001G122500 Sobic006G207900--Sobic004G124500 Sobic008G044750 Sobic008G044750 Sobic003G198150--Sobic008G044750 Sobic003G198150--Sobic003G198200 Sobic009G128300 Sobic009G128300 Sobic003G198150--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic003G198150--Sobic001G509400 Sobic003G079800 Sobic003G079800 Sobic003G198150--Sobic003G079800 Sobic003G198150--Sobic003G227600 Sobic003G198150--Sobic004G170032 Sobic003G233900 Sobic003G233900 Sobic003G198150--Sobic003G233900 Sobic003G198150--Sobic001G450800 Sobic003G229000--Sobic010G260300 Sobic002G189000 Sobic002G189000 Sobic003G229000--Sobic002G189000 Sobic003G229000--Sobic003G252400 Sobic002G110200 Sobic002G110200 Sobic003G229000--Sobic002G110200 Sobic007G131700 Sobic007G131700 Sobic003G229000--Sobic007G131700 Sobic002G013900 Sobic002G013900 Sobic003G229000--Sobic002G013900 Sobic003G291600 Sobic003G291600 Sobic003G229000--Sobic003G291600 Sobic005G209500 Sobic005G209500 Sobic003G229000--Sobic005G209500 Sobic003G229000--Sobic009G128300 Sobic010G140500 Sobic010G140500 Sobic010G165300--Sobic010G140500 Sobic002G028700 Sobic002G028700 Sobic010G165300--Sobic002G028700 Sobic003G397500 Sobic003G397500 Sobic010G165300--Sobic003G397500 Sobic006G175900 Sobic006G175900 Sobic010G165300--Sobic006G175900 Sobic010G165300--Sobic003G336100 Sobic003G036600 Sobic003G036600 Sobic010G165300--Sobic003G036600 Sobic001G426800 Sobic001G426800 Sobic010G165300--Sobic001G426800 Sobic010G165300--Sobic003G126300 Sobic001G409300 Sobic001G409300 Sobic010G165300--Sobic001G409300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.