Gene annotation
Transcriptome id Sobic.003G374850.1
Synonym -
Functional annotation -
UniProt A0A1W0W0T9
Pfam PF00076
Panther DB PTHR21136 PTHR21136:SF88
NCBI CDD KOG4206; Spliceosomal protein snRNP-U1A/U2B
KEGG Orthology K12831; SF3B4, splicing factor 3B subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G10110 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g65530.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039519 , Zm00025a037344 , Zm00025a026602 , Zm00025a043756
Brachypodium -
Barley -
Wheat TraesCS3B02G419000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
2 Sobic.005G044100 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.006G094500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
5 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
7 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
8 Sobic.003G312400 dymeclin, putative, expressed -
9 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
10 Sobic.008G058700 metal cation transporter, putative, expressed -
11 Sobic.002G297600 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
13 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
14 Sobic.008G003600 PMR5, putative, expressed -
15 Sobic.006G107400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
16 Sobic.003G434200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF630/DUF632 domains containing protein, putative, expressed -
17 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
18 Sobic.003G092700 xylosyltransferase, putative, expressed -
19 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
20 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G374850 Sobic003G374850 Sobic003G031200 Sobic003G031200 Sobic003G374850--Sobic003G031200 Sobic005G044100 Sobic005G044100 Sobic003G374850--Sobic005G044100 Sobic002G280900 Sobic002G280900 Sobic003G374850--Sobic002G280900 Sobic006G094500 Sobic006G094500 Sobic003G374850--Sobic006G094500 Sobic003G410400 Sobic003G410400 Sobic003G374850--Sobic003G410400 Sobic010G088300 Sobic010G088300 Sobic003G374850--Sobic010G088300 Sobic001G434400 Sobic001G434400 Sobic003G374850--Sobic001G434400 Sobic003G312400 Sobic003G312400 Sobic003G374850--Sobic003G312400 Sobic001G294600 Sobic001G294600 Sobic003G374850--Sobic001G294600 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic001G285300 Sobic001G285300 Sobic003G031200--Sobic001G285300 Sobic009G187600 Sobic009G187600 Sobic005G044100--Sobic009G187600 Sobic003G410200 Sobic003G410200 Sobic005G044100--Sobic003G410200 Sobic001G478700 Sobic001G478700 Sobic005G044100--Sobic001G478700 Sobic005G044100--Sobic001G434400 Sobic005G044100--Sobic002G280900 Sobic005G044100--Sobic006G094500 Sobic006G131900 Sobic006G131900 Sobic005G044100--Sobic006G131900 Sobic007G224300 Sobic007G224300 Sobic005G044100--Sobic007G224300 Sobic005G084900 Sobic005G084900 Sobic005G044100--Sobic005G084900 Sobic010G059700 Sobic010G059700 Sobic002G280900--Sobic010G059700 Sobic001G506000 Sobic001G506000 Sobic002G280900--Sobic001G506000 Sobic007G031100 Sobic007G031100 Sobic002G280900--Sobic007G031100 Sobic001G432100 Sobic001G432100 Sobic002G280900--Sobic001G432100 Sobic004G151200 Sobic004G151200 Sobic002G280900--Sobic004G151200 Sobic002G280900--Sobic005G084900 Sobic009G002000 Sobic009G002000 Sobic002G280900--Sobic009G002000 Sobic001G302900 Sobic001G302900 Sobic002G280900--Sobic001G302900 Sobic007G140600 Sobic007G140600 Sobic002G280900--Sobic007G140600 Sobic006G094500--Sobic009G187600 Sobic006G094500--Sobic007G224300 Sobic001G188700 Sobic001G188700 Sobic006G094500--Sobic001G188700 Sobic001G451901 Sobic001G451901 Sobic006G094500--Sobic001G451901 Sobic006G094500--Sobic001G434400 Sobic002G422400 Sobic002G422400 Sobic006G094500--Sobic002G422400 Sobic004G018200 Sobic004G018200 Sobic006G094500--Sobic004G018200 Sobic006G094500--Sobic002G280900 Sobic006G094500--Sobic007G031100 Sobic008G058700 Sobic008G058700 Sobic003G410400--Sobic008G058700 Sobic003G410400--Sobic003G043400 Sobic003G410400--Sobic003G312400 Sobic009G201800 Sobic009G201800 Sobic003G410400--Sobic009G201800 Sobic003G252900 Sobic003G252900 Sobic003G410400--Sobic003G252900 Sobic003G319000 Sobic003G319000 Sobic003G410400--Sobic003G319000 Sobic003G039200 Sobic003G039200 Sobic003G410400--Sobic003G039200 Sobic003G410400--Sobic003G031200 Sobic004G010700 Sobic004G010700 Sobic003G410400--Sobic004G010700 Sobic010G088300--Sobic003G031200 Sobic010G088300--Sobic003G043400 Sobic001G199300 Sobic001G199300 Sobic010G088300--Sobic001G199300 Sobic010G088300--Sobic001G434400 Sobic002G423800 Sobic002G423800 Sobic010G088300--Sobic002G423800 Sobic004G137900 Sobic004G137900 Sobic010G088300--Sobic004G137900 Sobic004G204800 Sobic004G204800 Sobic010G088300--Sobic004G204800 Sobic010G088300--Sobic002G044000 Sobic003G126800 Sobic003G126800 Sobic010G088300--Sobic003G126800 Sobic006G276200 Sobic006G276200 Sobic001G434400--Sobic006G276200 Sobic001G434400--Sobic010G088300 Sobic004G012800 Sobic004G012800 Sobic001G434400--Sobic004G012800 Sobic006G231500 Sobic006G231500 Sobic001G434400--Sobic006G231500 Sobic001G434400--Sobic004G242100 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G130400 Sobic001G130400 Sobic001G434400--Sobic001G130400 Sobic005G110526 Sobic005G110526 Sobic001G434400--Sobic005G110526 Sobic003G312400--Sobic003G252900 Sobic003G312400--Sobic003G410400 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic003G358200 Sobic003G358200 Sobic001G294600--Sobic003G358200 Sobic001G294600--Sobic003G252900 Sobic001G294600--Sobic008G058700 Sobic006G107400 Sobic006G107400 Sobic001G294600--Sobic006G107400 Sobic001G294600--Sobic005G084900 Sobic001G067000 Sobic001G067000 Sobic001G294600--Sobic001G067000 Sobic001G168500 Sobic001G168500 Sobic001G294600--Sobic001G168500 Sobic001G379000 Sobic001G379000 Sobic001G294600--Sobic001G379000 Sobic006G164000 Sobic006G164000 Sobic001G294600--Sobic006G164000
Octagon: transcription factors


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