Gene annotation
| Transcriptome id | Sobic.003G391500.2,Sobic.003G391500.3,Sobic.003G391500.1 |
|---|---|
| Synonym | Sb03g042900, VTC5 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) VTC2, putative, expressed |
| UniProt | A0A1B6Q7Q1 , A0A1B6Q7N6 , A0A1B6Q7N3 |
| Pfam | - |
| Panther DB | PTHR20884 PTHR20884:SF8 |
| NCBI CDD | KOG2720; Predicted hydrolase (HIT family) |
| KEGG Orthology | K14190; GDP-L-galactose phosphorylase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G55120 : galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4\'-O-glucosyltransferases |
|---|---|
| RAP-DB (Rice) | LOC_Os01g67520.1 : VTC2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026398 |
| Brachypodium | KQK11054 , KQK11055 |
| Barley | HORVU3Hr1G089030.2 , HORVU3Hr1G089030.1 , HORVU3Hr1G089030.7 , HORVU3Hr1G089030.6 , HORVU3Hr1G089030.4 , HORVU3Hr1G089030.9 , HORVU3Hr1G089030.8 , HORVU3Hr1G089030.13 , HORVU3Hr1G089030.12 , HORVU3Hr1G089030.11 , HORVU3Hr1G089030.10 , HORVU3Hr1G089030.16 , HORVU3Hr1G089030.15 , HORVU3Hr1G089030.14 |
| Wheat | TraesCS3D02G388200 , TraesCS3B02G426400 , TraesCS3B02G426400 , TraesCS3B02G426400 , TraesCS3A02G394400 , TraesCS3A02G394400 , TraesCS3A02G394400 |
| Populus | - |
JBrowse
| Sobic.003G391500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G503200 | ZOS3-01 - C2H2 zinc finger protein, expressed | - |
| 2 | Sobic.004G262600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.009G037800 | phosphoglycerate mutase, putative, expressed | - |
| 4 | Sobic.004G303400 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 5 | Sobic.001G217300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed | - |
| 6 | Sobic.007G140900 | similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 7 | Sobic.003G410700 | exostosin family domain containing protein, expressed | - |
| 8 | Sobic.003G188600 | expressed protein | - |
| 9 | Sobic.006G189200 | ubiquitin-conjugating enzyme, putative, expressed | K10577: UBE2I, ubiquitin-conjugating enzyme E2 I |
| 10 | Sobic.010G248000 | EDR2, putative, expressed | - |
| 11 | Sobic.007G196500 | SAM domain containing protein, putative, expressed | - |
| 12 | Sobic.001G404700 | protein kinase, putative, expressed | - |
| 13 | Sobic.003G094600 | glycosyltransferase protein, putative, expressed | - |
| 14 | Sobic.009G185501 | - | - |
| 15 | Sobic.004G331900 | transmembrane 9 superfamily member, putative, expressed | - |
| 16 | Sobic.001G119700 | transcription regulator, putative, expressed | - |
| 17 | Sobic.002G151400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cyclin-dependent kinase G-1, putative, expressed | K08818: cell division cycle 2-like |
| 18 | Sobic.010G150200 | OsFBX209 - F-box domain containing protein, expressed | - |
| 19 | Sobic.003G223900 | extra-large G-protein-related, putative, expressed | - |
| 20 | Sobic.004G336100 | ribonucleoside-diphosphate reductase large subunit, putative, expressed | K10807: ribonucleoside-diphosphate reductase subunit M1 |
Gene co-expression network
Octagon: transcription factors
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