Gene annotation
Transcriptome id Sobic.003G409400.1
Synonym ATDCI1, DCI1, Sb03g044410
Functional annotation enoyl-CoA hydratase/isomerase family protein, putative, expressed
UniProt A0A1B6Q7X2
Pfam PF16113
Panther DB PTHR11941 PTHR11941:SF43
NCBI CDD KOG1681; Enoyl-CoA isomerase
KEGG Orthology K12663; Delta3,5-Delta2,4-dienoyl-CoA isomerase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43280 : delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1
RAP-DB (Rice) LOC_Os01g70090.1 : enoyl-CoA hydratase/isomerase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039259
Brachypodium KQK11298
Barley HORVU3Hr1G095760.6 , HORVU3Hr1G095760.4 , HORVU3Hr1G095760.5 , HORVU3Hr1G095760.2 , HORVU3Hr1G095760.3
Wheat TraesCS3A02G438000 , TraesCS3D02G430300 , TraesCS3D02G430300 , TraesCS3B02G472000 , TraesCS3B02G472000 , TraesCS3D02G430400 , TraesCS3D02G430400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G409400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
2 Sobic.005G032300 ubiquitin-like protein 5, putative, expressed K13113: UBL5, ubiquitin-like protein 5
3 Sobic.001G252000 uridylyltransferase-related, putative, expressed -
4 Sobic.001G451700 cytochrome P450 protein, putative, expressed -
5 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.004G337200 dehydrogenase, putative, expressed -
7 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
8 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
9 Sobic.002G193100 expressed protein -
10 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
11 Sobic.009G011600 expressed protein -
12 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.003G365000 cytochrome P450, putative, expressed -
14 Sobic.007G169300 expressed protein -
15 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
16 Sobic.006G160300 DNA binding protein, putative, expressed -
17 Sobic.009G190600 oryzain alpha chain precursor, putative, expressed -
18 Sobic.009G073100 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
19 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
20 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase


Gene co-expression network
sample Sobic003G409400 Sobic003G409400 Sobic006G213500 Sobic006G213500 Sobic003G409400--Sobic006G213500 Sobic005G032300 Sobic005G032300 Sobic003G409400--Sobic005G032300 Sobic001G252000 Sobic001G252000 Sobic003G409400--Sobic001G252000 Sobic001G451700 Sobic001G451700 Sobic003G409400--Sobic001G451700 Sobic005G149700 Sobic005G149700 Sobic003G409400--Sobic005G149700 Sobic004G337200 Sobic004G337200 Sobic003G409400--Sobic004G337200 Sobic003G125400 Sobic003G125400 Sobic003G409400--Sobic003G125400 Sobic006G175800 Sobic006G175800 Sobic003G409400--Sobic006G175800 Sobic002G193100 Sobic002G193100 Sobic003G409400--Sobic002G193100 Sobic010G196500 Sobic010G196500 Sobic006G213500--Sobic010G196500 Sobic001G500800 Sobic001G500800 Sobic006G213500--Sobic001G500800 Sobic006G213500--Sobic002G193100 Sobic007G169300 Sobic007G169300 Sobic006G213500--Sobic007G169300 Sobic001G381200 Sobic001G381200 Sobic006G213500--Sobic001G381200 Sobic003G343500 Sobic003G343500 Sobic006G213500--Sobic003G343500 Sobic002G116800 Sobic002G116800 Sobic006G213500--Sobic002G116800 Sobic007G084300 Sobic007G084300 Sobic006G213500--Sobic007G084300 Sobic001G488700 Sobic001G488700 Sobic006G213500--Sobic001G488700 Sobic005G032300--Sobic003G125400 Sobic008G146900 Sobic008G146900 Sobic005G032300--Sobic008G146900 Sobic003G314500 Sobic003G314500 Sobic005G032300--Sobic003G314500 Sobic010G184600 Sobic010G184600 Sobic005G032300--Sobic010G184600 Sobic008G144800 Sobic008G144800 Sobic005G032300--Sobic008G144800 Sobic008G004700 Sobic008G004700 Sobic005G032300--Sobic008G004700 Sobic003G404200 Sobic003G404200 Sobic005G032300--Sobic003G404200 Sobic003G410900 Sobic003G410900 Sobic005G032300--Sobic003G410900 Sobic006G258700 Sobic006G258700 Sobic005G032300--Sobic006G258700 Sobic004G034600 Sobic004G034600 Sobic001G252000--Sobic004G034600 Sobic002G249300 Sobic002G249300 Sobic001G252000--Sobic002G249300 Sobic009G019100 Sobic009G019100 Sobic001G252000--Sobic009G019100 Sobic009G011600 Sobic009G011600 Sobic001G252000--Sobic009G011600 Sobic003G174301 Sobic003G174301 Sobic001G252000--Sobic003G174301 Sobic008G081900 Sobic008G081900 Sobic001G252000--Sobic008G081900 Sobic001G252000--Sobic007G084300 Sobic009G213800 Sobic009G213800 Sobic001G252000--Sobic009G213800 Sobic004G131040 Sobic004G131040 Sobic001G252000--Sobic004G131040 Sobic007G157100 Sobic007G157100 Sobic001G451700--Sobic007G157100 Sobic003G162100 Sobic003G162100 Sobic001G451700--Sobic003G162100 Sobic001G451700--Sobic006G213500 Sobic002G373100 Sobic002G373100 Sobic001G451700--Sobic002G373100 Sobic005G045200 Sobic005G045200 Sobic001G451700--Sobic005G045200 Sobic001G451700--Sobic003G410900 Sobic001G451700--Sobic003G125400 Sobic008G027200 Sobic008G027200 Sobic001G451700--Sobic008G027200 Sobic002G037800 Sobic002G037800 Sobic001G451700--Sobic002G037800 Sobic005G149700--Sobic004G034600 Sobic001G504900 Sobic001G504900 Sobic005G149700--Sobic001G504900 Sobic002G266000 Sobic002G266000 Sobic005G149700--Sobic002G266000 Sobic002G128200 Sobic002G128200 Sobic005G149700--Sobic002G128200 Sobic006G104600 Sobic006G104600 Sobic005G149700--Sobic006G104600 Sobic005G149700--Sobic009G011600 Sobic009G207600 Sobic009G207600 Sobic005G149700--Sobic009G207600 Sobic005G149700--Sobic003G174301 Sobic003G398100 Sobic003G398100 Sobic005G149700--Sobic003G398100 Sobic001G270400 Sobic001G270400 Sobic004G337200--Sobic001G270400 Sobic003G116900 Sobic003G116900 Sobic004G337200--Sobic003G116900 Sobic001G121200 Sobic001G121200 Sobic004G337200--Sobic001G121200 Sobic001G296900 Sobic001G296900 Sobic004G337200--Sobic001G296900 Sobic004G266400 Sobic004G266400 Sobic004G337200--Sobic004G266400 Sobic002G364800 Sobic002G364800 Sobic004G337200--Sobic002G364800 Sobic006G160300 Sobic006G160300 Sobic004G337200--Sobic006G160300 Sobic005G203800 Sobic005G203800 Sobic004G337200--Sobic005G203800 Sobic006G034000 Sobic006G034000 Sobic004G337200--Sobic006G034000 Sobic003G125400--Sobic008G144800 Sobic006G110900 Sobic006G110900 Sobic003G125400--Sobic006G110900 Sobic002G424100 Sobic002G424100 Sobic003G125400--Sobic002G424100 Sobic008G063200 Sobic008G063200 Sobic003G125400--Sobic008G063200 Sobic002G246500 Sobic002G246500 Sobic003G125400--Sobic002G246500 Sobic003G310100 Sobic003G310100 Sobic003G125400--Sobic003G310100 Sobic010G140600 Sobic010G140600 Sobic003G125400--Sobic010G140600 Sobic003G343400 Sobic003G343400 Sobic003G125400--Sobic003G343400 Sobic010G080300 Sobic010G080300 Sobic003G125400--Sobic010G080300 Sobic010G262500 Sobic010G262500 Sobic006G175800--Sobic010G262500 Sobic004G169000 Sobic004G169000 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic002G187700 Sobic002G187700 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic006G175800--Sobic001G500800 Sobic006G175800--Sobic010G196500 Sobic004G026500 Sobic004G026500 Sobic002G193100--Sobic004G026500 Sobic002G193100--Sobic010G196500 Sobic007G227700 Sobic007G227700 Sobic002G193100--Sobic007G227700 Sobic002G193100--Sobic007G169300 Sobic002G276100 Sobic002G276100 Sobic002G193100--Sobic002G276100 Sobic006G065600 Sobic006G065600 Sobic002G193100--Sobic006G065600 Sobic002G193100--Sobic003G343500 Sobic001G219700 Sobic001G219700 Sobic002G193100--Sobic001G219700 Sobic002G345700 Sobic002G345700 Sobic002G193100--Sobic002G345700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.