Gene annotation
Transcriptome id Sobic.003G416800.1
Synonym Sb03g045040
Functional annotation lumenal PsbP, putative, expressed
UniProt C5XH39
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G05410 : Photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os01g70820.1 : lumenal PsbP, putative, expressed
MaizeGDB (Corn) Zm00025a026129
Brachypodium KQK11396
Barley -
Wheat TraesCS3B02G493700 , TraesCS3A02G454900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G416800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
3 Sobic.004G311500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
6 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
8 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
9 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
11 Sobic.003G012800 AP2 domain containing protein, expressed -
12 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
13 Sobic.001G436000 expressed protein -
14 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
15 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
16 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
17 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G416800 Sobic003G416800 Sobic003G268700 Sobic003G268700 Sobic003G416800--Sobic003G268700 Sobic001G192800 Sobic001G192800 Sobic003G416800--Sobic001G192800 Sobic004G311500 Sobic004G311500 Sobic003G416800--Sobic004G311500 Sobic009G217600 Sobic009G217600 Sobic003G416800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic003G416800--Sobic001G035000 Sobic001G209800 Sobic001G209800 Sobic003G416800--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic003G416800--Sobic001G441100 Sobic009G071800 Sobic009G071800 Sobic003G416800--Sobic009G071800 Sobic006G184400 Sobic006G184400 Sobic003G416800--Sobic006G184400 Sobic003G268700--Sobic009G071800 Sobic008G036000 Sobic008G036000 Sobic003G268700--Sobic008G036000 Sobic003G012800 Sobic003G012800 Sobic003G268700--Sobic003G012800 Sobic009G167000 Sobic009G167000 Sobic003G268700--Sobic009G167000 Sobic003G268700--Sobic001G209800 Sobic001G473900 Sobic001G473900 Sobic003G268700--Sobic001G473900 Sobic002G217100 Sobic002G217100 Sobic003G268700--Sobic002G217100 Sobic010G076600 Sobic010G076600 Sobic003G268700--Sobic010G076600 Sobic001G077700 Sobic001G077700 Sobic003G268700--Sobic001G077700 Sobic001G196900 Sobic001G196900 Sobic001G192800--Sobic001G196900 Sobic001G192800--Sobic009G217600 Sobic001G192800--Sobic001G035000 Sobic009G217500 Sobic009G217500 Sobic001G192800--Sobic009G217500 Sobic003G341100 Sobic003G341100 Sobic001G192800--Sobic003G341100 Sobic003G361100 Sobic003G361100 Sobic001G192800--Sobic003G361100 Sobic006G273800 Sobic006G273800 Sobic001G192800--Sobic006G273800 Sobic001G192800--Sobic006G184400 Sobic001G341600 Sobic001G341600 Sobic001G192800--Sobic001G341600 Sobic006G179500 Sobic006G179500 Sobic004G311500--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic004G311500--Sobic002G140300 Sobic006G089300 Sobic006G089300 Sobic004G311500--Sobic006G089300 Sobic004G280900 Sobic004G280900 Sobic004G311500--Sobic004G280900 Sobic006G228300 Sobic006G228300 Sobic004G311500--Sobic006G228300 Sobic001G040200 Sobic001G040200 Sobic004G311500--Sobic001G040200 Sobic004G286600 Sobic004G286600 Sobic004G311500--Sobic004G286600 Sobic004G311500--Sobic009G217600 Sobic002G294700 Sobic002G294700 Sobic004G311500--Sobic002G294700 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic001G077400 Sobic001G077400 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic005G037000 Sobic005G037000 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic001G209800--Sobic001G077400 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G209800--Sobic001G035000 Sobic001G209800--Sobic005G037000 Sobic001G209800--Sobic001G441100 Sobic001G209800--Sobic010G076600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic001G441100--Sobic005G037000 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G441100--Sobic001G209800 Sobic001G441100--Sobic002G140300 Sobic009G071800--Sobic001G077700 Sobic002G203000 Sobic002G203000 Sobic009G071800--Sobic002G203000 Sobic010G234600 Sobic010G234600 Sobic009G071800--Sobic010G234600 Sobic002G248100 Sobic002G248100 Sobic009G071800--Sobic002G248100 Sobic009G071800--Sobic002G294700 Sobic010G076700 Sobic010G076700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic006G095600 Sobic006G095600 Sobic009G071800--Sobic006G095600 Sobic004G305000 Sobic004G305000 Sobic006G184400--Sobic004G305000 Sobic006G184400--Sobic010G076600 Sobic006G184400--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic006G184400--Sobic006G210300 Sobic006G184400--Sobic001G398500 Sobic006G184400--Sobic001G192800 Sobic006G184400--Sobic003G361100 Sobic006G184400--Sobic009G071800 Sobic006G184400--Sobic003G353800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.