Gene annotation
Transcriptome id Sobic.004G013200.5,Sobic.004G013200.3,Sobic.004G013200.6,Sobic.004G013200.4,Sobic.004G013200.2,Sobic.004G013200.7
Synonym ATGLR3.3, GLR3.3, Sb04g001290
Functional annotation glutamate receptor, putative, expressed
UniProt C5XSC2 , A0A1Z5RKE9
Pfam PF13458 PF00497 PF00060
Panther DB PTHR18966 PTHR18966:SF198
NCBI CDD KOG1052; Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0004970ionotropic glutamate receptor activity


Orthologs (automatic annotation)
TAIR AT1G42540 : glutamate receptor 3.3
RAP-DB (Rice) LOC_Os02g02540.1 : glutamate receptor, putative, expressed
MaizeGDB (Corn) Zm00025a017797 , Zm00025a018721 , Zm00025a035045
Brachypodium -
Barley HORVU6Hr1G009520.5 , HORVU6Hr1G009520.6 , HORVU6Hr1G009520.7 , HORVU6Hr1G009520.1 , HORVU6Hr1G009520.2
Wheat TraesCS6A02G049000 , TraesCS6B02G065400 , TraesCSU02G107700 , TraesCSU02G107700 , TraesCS6B02G065500 , TraesCSU02G107990 , TraesCS6A02G049900 , TraesCS6A02G048800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436800 expressed protein -
2 Sobic.001G129700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
3 Sobic.004G210700 ATOZI1, putative, expressed -
4 Sobic.005G215601 - -
5 Sobic.009G123400 - -
6 Sobic.003G278100 expressed protein -
7 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
8 Sobic.002G104200 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
9 Sobic.010G032000 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
10 Sobic.001G525200 expressed protein -
11 Sobic.002G090600 OsFBX397 - F-box domain containing protein, expressed -
12 Sobic.003G145600 expressed protein -
13 Sobic.003G145400 expressed protein -
14 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
15 Sobic.007G066900 Cupin domain containing protein, expressed -
16 Sobic.006G230700 wound induced protein, putative, expressed -
17 Sobic.001G256000 expressed protein -
18 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
19 Sobic.003G327500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
20 Sobic.004G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase


Gene co-expression network
sample Sobic004G013200 Sobic004G013200 Sobic001G436800 Sobic001G436800 Sobic004G013200--Sobic001G436800 Sobic001G129700 Sobic001G129700 Sobic004G013200--Sobic001G129700 Sobic004G210700 Sobic004G210700 Sobic004G013200--Sobic004G210700 Sobic005G215601 Sobic005G215601 Sobic004G013200--Sobic005G215601 Sobic009G123400 Sobic009G123400 Sobic004G013200--Sobic009G123400 Sobic003G278100 Sobic003G278100 Sobic004G013200--Sobic003G278100 Sobic010G031100 Sobic010G031100 Sobic004G013200--Sobic010G031100 Sobic002G104200 Sobic002G104200 Sobic004G013200--Sobic002G104200 Sobic010G032000 Sobic010G032000 Sobic004G013200--Sobic010G032000 Sobic001G436800--Sobic010G031100 Sobic002G090600 Sobic002G090600 Sobic001G436800--Sobic002G090600 Sobic001G436800--Sobic005G215601 Sobic001G436800--Sobic004G210700 Sobic006G230800 Sobic006G230800 Sobic001G436800--Sobic006G230800 Sobic003G327500 Sobic003G327500 Sobic001G436800--Sobic003G327500 Sobic001G436800--Sobic010G032000 Sobic001G436800--Sobic001G129700 Sobic006G032700 Sobic006G032700 Sobic001G436800--Sobic006G032700 Sobic001G129700--Sobic010G032000 Sobic001G129700--Sobic005G215601 Sobic001G129700--Sobic009G123400 Sobic001G129700--Sobic001G436800 Sobic004G340200 Sobic004G340200 Sobic001G129700--Sobic004G340200 Sobic007G066900 Sobic007G066900 Sobic001G129700--Sobic007G066900 Sobic001G129700--Sobic004G210700 Sobic010G031900 Sobic010G031900 Sobic001G129700--Sobic010G031900 Sobic001G354200 Sobic001G354200 Sobic001G129700--Sobic001G354200 Sobic004G210700--Sobic004G340200 Sobic004G210700--Sobic007G066900 Sobic004G210700--Sobic009G123400 Sobic007G067608 Sobic007G067608 Sobic004G210700--Sobic007G067608 Sobic004G210700--Sobic010G031100 Sobic004G210700--Sobic010G032000 Sobic004G210700--Sobic005G215601 Sobic004G140850 Sobic004G140850 Sobic004G210700--Sobic004G140850 Sobic005G215601--Sobic010G032000 Sobic005G215601--Sobic004G340200 Sobic005G215601--Sobic009G123400 Sobic005G215601--Sobic010G031100 Sobic005G215601--Sobic001G129700 Sobic005G215601--Sobic004G210700 Sobic005G215601--Sobic001G354200 Sobic005G215601--Sobic007G066900 Sobic005G215601--Sobic006G032700 Sobic009G123400--Sobic004G340200 Sobic009G123400--Sobic010G032000 Sobic009G123400--Sobic010G031100 Sobic009G123400--Sobic005G215601 Sobic009G123400--Sobic010G031900 Sobic009G123400--Sobic004G210700 Sobic009G123400--Sobic007G066900 Sobic004G088300 Sobic004G088300 Sobic009G123400--Sobic004G088300 Sobic006G230600 Sobic006G230600 Sobic009G123400--Sobic006G230600 Sobic003G278100--Sobic004G013200 Sobic007G073500 Sobic007G073500 Sobic003G278100--Sobic007G073500 Sobic003G145600 Sobic003G145600 Sobic003G278100--Sobic003G145600 Sobic003G278100--Sobic004G140850 Sobic003G278100--Sobic009G123400 Sobic003G278100--Sobic004G210700 Sobic003G278100--Sobic004G340200 Sobic010G032100 Sobic010G032100 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic002G261200 Sobic002G261200 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic001G254100 Sobic001G254100 Sobic010G031100--Sobic001G254100 Sobic001G525200 Sobic001G525200 Sobic002G104200--Sobic001G525200 Sobic003G145400 Sobic003G145400 Sobic002G104200--Sobic003G145400 Sobic001G280800 Sobic001G280800 Sobic002G104200--Sobic001G280800 Sobic007G144501 Sobic007G144501 Sobic002G104200--Sobic007G144501 Sobic002G104200--Sobic004G210700 Sobic008G162700 Sobic008G162700 Sobic002G104200--Sobic008G162700 Sobic009G182900 Sobic009G182900 Sobic002G104200--Sobic009G182900 Sobic004G236100 Sobic004G236100 Sobic002G104200--Sobic004G236100 Sobic002G042000 Sobic002G042000 Sobic002G104200--Sobic002G042000 Sobic010G032000--Sobic005G215601 Sobic010G032000--Sobic004G340200 Sobic010G032000--Sobic009G123400 Sobic010G032000--Sobic007G066900 Sobic010G032000--Sobic001G129700 Sobic010G032000--Sobic004G210700 Sobic010G032000--Sobic004G140850
Octagon: transcription factors


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