Gene annotation
Transcriptome id Sobic.004G033400.2
Synonym Sb04g002885
Functional annotation DNA polymerase V, putative, expressed
UniProt A0A1Z5RKQ9
Pfam PF12274 PF04931
Panther DB PTHR13213 PTHR13213:SF2
NCBI CDD -
KEGG Orthology K02331; POL5, DNA polymerase phi
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G64420 : DNA polymerase V family
RAP-DB (Rice) LOC_Os02g04270.1 : DNA polymerase V, putative, expressed
MaizeGDB (Corn) Zm00025a018906
Brachypodium KQJ93197
Barley HORVU6Hr1G018330.5 , HORVU6Hr1G018330.4 , HORVU6Hr1G018330.3 , HORVU6Hr1G018330.2 , HORVU6Hr1G018330.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
2 Sobic.007G063800 - -
3 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
4 Sobic.008G007600 - -
5 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
6 Sobic.003G018000 expressed protein -
7 Sobic.002G013550 - K08770: ubiquitin C
8 Sobic.010G266600 calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed -
9 Sobic.009G220700 - -
10 Sobic.010G038300 OsFBDUF33 - F-box and DUF domain containing protein, expressed -
11 Sobic.001G506400 expressed protein -
12 Sobic.005G202901 - -
13 Sobic.008G124600 expressed protein -
14 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
15 Sobic.001G387300 exostosin family domain containing protein, expressed -
16 Sobic.009G168150 - -
17 Sobic.010G073900 expressed protein -
18 Sobic.002G299500 expressed protein -
19 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
20 Sobic.001G034200 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic004G033400 Sobic004G033400 Sobic003G217800 Sobic003G217800 Sobic004G033400--Sobic003G217800 Sobic007G063800 Sobic007G063800 Sobic004G033400--Sobic007G063800 Sobic007G144100 Sobic007G144100 Sobic004G033400--Sobic007G144100 Sobic008G007600 Sobic008G007600 Sobic004G033400--Sobic008G007600 Sobic003G352900 Sobic003G352900 Sobic004G033400--Sobic003G352900 Sobic003G018000 Sobic003G018000 Sobic004G033400--Sobic003G018000 Sobic002G013550 Sobic002G013550 Sobic004G033400--Sobic002G013550 Sobic010G266600 Sobic010G266600 Sobic004G033400--Sobic010G266600 Sobic009G220700 Sobic009G220700 Sobic004G033400--Sobic009G220700 Sobic003G217800--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic003G217800--Sobic003G258100 Sobic003G217800--Sobic003G352900 Sobic002G299500 Sobic002G299500 Sobic003G217800--Sobic002G299500 Sobic003G217800--Sobic003G018000 Sobic001G485700 Sobic001G485700 Sobic003G217800--Sobic001G485700 Sobic003G217800--Sobic009G220700 Sobic004G062600 Sobic004G062600 Sobic003G217800--Sobic004G062600 Sobic010G263400 Sobic010G263400 Sobic003G217800--Sobic010G263400 Sobic010G038300 Sobic010G038300 Sobic007G063800--Sobic010G038300 Sobic005G202901 Sobic005G202901 Sobic007G063800--Sobic005G202901 Sobic007G063800--Sobic010G266600 Sobic006G204500 Sobic006G204500 Sobic007G063800--Sobic006G204500 Sobic004G014200 Sobic004G014200 Sobic007G063800--Sobic004G014200 Sobic006G070032 Sobic006G070032 Sobic007G063800--Sobic006G070032 Sobic002G364700 Sobic002G364700 Sobic007G063800--Sobic002G364700 Sobic007G063800--Sobic008G007600 Sobic008G029800 Sobic008G029800 Sobic007G063800--Sobic008G029800 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic001G076600 Sobic001G076600 Sobic007G144100--Sobic001G076600 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic004G038400 Sobic004G038400 Sobic007G144100--Sobic004G038400 Sobic008G007600--Sobic010G266600 Sobic008G007600--Sobic002G364700 Sobic002G307400 Sobic002G307400 Sobic008G007600--Sobic002G307400 Sobic008G071800 Sobic008G071800 Sobic008G007600--Sobic008G071800 Sobic008G007600--Sobic007G063800 Sobic009G061500 Sobic009G061500 Sobic008G007600--Sobic009G061500 Sobic008G007600--Sobic006G204500 Sobic008G007600--Sobic002G299500 Sobic001G340800 Sobic001G340800 Sobic008G007600--Sobic001G340800 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G376900 Sobic003G376900 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic005G045800 Sobic005G045800 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic001G385300 Sobic001G385300 Sobic003G352900--Sobic001G385300 Sobic003G352900--Sobic008G007600 Sobic003G018000--Sobic002G013550 Sobic001G518900 Sobic001G518900 Sobic003G018000--Sobic001G518900 Sobic001G103600 Sobic001G103600 Sobic003G018000--Sobic001G103600 Sobic009G149100 Sobic009G149100 Sobic003G018000--Sobic009G149100 Sobic008G095500 Sobic008G095500 Sobic003G018000--Sobic008G095500 Sobic004G335400 Sobic004G335400 Sobic003G018000--Sobic004G335400 Sobic004G002700 Sobic004G002700 Sobic003G018000--Sobic004G002700 Sobic005G041500 Sobic005G041500 Sobic003G018000--Sobic005G041500 Sobic006G276600 Sobic006G276600 Sobic003G018000--Sobic006G276600 Sobic002G013550--Sobic009G149100 Sobic004G254700 Sobic004G254700 Sobic002G013550--Sobic004G254700 Sobic008G071700 Sobic008G071700 Sobic002G013550--Sobic008G071700 Sobic002G019300 Sobic002G019300 Sobic002G013550--Sobic002G019300 Sobic002G013550--Sobic006G276600 Sobic002G013550--Sobic004G335400 Sobic005G006900 Sobic005G006900 Sobic002G013550--Sobic005G006900 Sobic002G298600 Sobic002G298600 Sobic002G013550--Sobic002G298600 Sobic002G013550--Sobic005G041500 Sobic010G266600--Sobic002G307400 Sobic005G221675 Sobic005G221675 Sobic010G266600--Sobic005G221675 Sobic004G100300 Sobic004G100300 Sobic010G266600--Sobic004G100300 Sobic010G266600--Sobic006G070032 Sobic010G266600--Sobic008G029800 Sobic002G384900 Sobic002G384900 Sobic010G266600--Sobic002G384900 Sobic006G200300 Sobic006G200300 Sobic010G266600--Sobic006G200300 Sobic007G081800 Sobic007G081800 Sobic010G266600--Sobic007G081800 Sobic007G198900 Sobic007G198900 Sobic010G266600--Sobic007G198900 Sobic008G156600 Sobic008G156600 Sobic009G220700--Sobic008G156600 Sobic009G220700--Sobic009G163100 Sobic001G072000 Sobic001G072000 Sobic009G220700--Sobic001G072000 Sobic009G220700--Sobic003G217800 Sobic001G322400 Sobic001G322400 Sobic009G220700--Sobic001G322400 Sobic009G220700--Sobic001G485700 Sobic010G073900 Sobic010G073900 Sobic009G220700--Sobic010G073900 Sobic009G220700--Sobic003G352900 Sobic009G025700 Sobic009G025700 Sobic009G220700--Sobic009G025700
Octagon: transcription factors


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