Gene annotation
| Transcriptome id | Sobic.004G046500.2,Sobic.004G046500.3,Sobic.004G046500.1 |
|---|---|
| Synonym | Sb04g003970 |
| Functional annotation | GTP-binding protein lepA, putative, expressed |
| UniProt | A0A1Z5RM08 , A0A194YMQ2 |
| Pfam | PF00009 PF03144 PF00679 PF06421 PF03144 PF00679 PF06421 PF00009 |
| Panther DB | PTHR23115 PTHR23115:SF189 |
| NCBI CDD | - |
| KEGG Orthology | K03596; GTP-binding protein LepA |
| Gene Ontology | GO:0005525; GTP binding |
Orthologs (automatic annotation)
| TAIR | AT5G08650 : Small GTP-binding protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g06300.1 : GTP-binding protein lepA, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034867 |
| Brachypodium | KQJ93408 , KQJ93407 |
| Barley | HORVU6Hr1G025110.7 , HORVU6Hr1G025110.4 , HORVU6Hr1G025110.3 , HORVU6Hr1G025110.2 , HORVU6Hr1G025110.1 , HORVU6Hr1G025110.6 , HORVU6Hr1G025110.5 , HORVU6Hr1G025110.8 |
| Wheat | TraesCS6A02G130900 , TraesCS6A02G130900 , TraesCS6B02G159200 , TraesCS6D02G120800 |
| Populus | - |
JBrowse
| Sobic.004G046500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 2 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 3 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 4 | Sobic.003G094100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 5 | Sobic.007G103400 | expressed protein | - |
| 6 | Sobic.002G275300 | deoxyribodipyrimidine photolyase family protein, expressed | - |
| 7 | Sobic.007G108900 | APE1, putative, expressed | - |
| 8 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 9 | Sobic.002G198300 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 10 | Sobic.003G306200 | hemimethylated DNA binding domain containing protein, expressed | - |
| 11 | Sobic.007G007200 | - | - |
| 12 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 13 | Sobic.010G181300 | SOUL heme-binding protein, putative, expressed | - |
| 14 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 15 | Sobic.001G180200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed | K13348: protein Mpv17 |
| 16 | Sobic.004G353100 | -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed | K15283: solute carrier family 35, member E1 |
| 17 | Sobic.006G238200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 18 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 19 | Sobic.001G504400 | expressed protein | - |
| 20 | Sobic.009G038701 | - | - |
Gene co-expression network
Octagon: transcription factors
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