Gene annotation
Transcriptome id Sobic.004G076100.1
Synonym Sb04g006280
Functional annotation lysM-domain containing receptor-like kinase, putative, expressed
UniProt C5XXD8
Pfam PF01476 PF07714
Panther DB PTHR27001 PTHR27001:SF183
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G33580 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os02g09960.1 : LYK8, putative, expressed
MaizeGDB (Corn) Zm00025a034687 , Zm00025a019677
Brachypodium KQJ93795
Barley HORVU6Hr1G034570.3 , HORVU6Hr1G034570.2 , HORVU6Hr1G034570.1 , HORVU6Hr1G066120.3 , HORVU6Hr1G066120.2 , HORVU0Hr1G023200.1 , HORVU6Hr1G066120.1 , HORVU6Hr1G034490.1
Wheat TraesCS6B02G266500 , TraesCS6D02G157800 , TraesCS6A02G168800 , TraesCS4A02G427200 , TraesCS2A02G456900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
2 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
4 Sobic.002G325800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
5 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
6 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
7 Sobic.003G416500 SRC2 protein, putative, expressed -
8 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
9 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
10 Sobic.002G202100 expressed protein -
11 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
12 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
14 Sobic.009G151900 expressed protein -
15 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.002G232700 clathrin assembly protein, putative, expressed -
17 Sobic.003G039600 expressed protein -
18 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
20 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G076100 Sobic004G076100 Sobic002G232800 Sobic002G232800 Sobic004G076100--Sobic002G232800 Sobic007G090300 Sobic007G090300 Sobic004G076100--Sobic007G090300 Sobic002G353400 Sobic002G353400 Sobic004G076100--Sobic002G353400 Sobic002G325800 Sobic002G325800 Sobic004G076100--Sobic002G325800 Sobic001G064900 Sobic001G064900 Sobic004G076100--Sobic001G064900 Sobic003G341100 Sobic003G341100 Sobic004G076100--Sobic003G341100 Sobic003G416500 Sobic003G416500 Sobic004G076100--Sobic003G416500 Sobic010G102000 Sobic010G102000 Sobic004G076100--Sobic010G102000 Sobic003G353800 Sobic003G353800 Sobic004G076100--Sobic003G353800 Sobic002G232800--Sobic010G102000 Sobic002G232800--Sobic003G341100 Sobic009G217500 Sobic009G217500 Sobic002G232800--Sobic009G217500 Sobic001G341600 Sobic001G341600 Sobic002G232800--Sobic001G341600 Sobic007G077100 Sobic007G077100 Sobic002G232800--Sobic007G077100 Sobic010G023200 Sobic010G023200 Sobic002G232800--Sobic010G023200 Sobic010G071000 Sobic010G071000 Sobic002G232800--Sobic010G071000 Sobic010G209100 Sobic010G209100 Sobic002G232800--Sobic010G209100 Sobic002G232800--Sobic007G090300 Sobic009G100500 Sobic009G100500 Sobic007G090300--Sobic009G100500 Sobic006G259000 Sobic006G259000 Sobic007G090300--Sobic006G259000 Sobic002G199500 Sobic002G199500 Sobic007G090300--Sobic002G199500 Sobic001G059400 Sobic001G059400 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic007G090300--Sobic003G341100 Sobic002G374100 Sobic002G374100 Sobic002G353400--Sobic002G374100 Sobic002G343500 Sobic002G343500 Sobic002G353400--Sobic002G343500 Sobic007G188100 Sobic007G188100 Sobic002G353400--Sobic007G188100 Sobic002G353400--Sobic001G341600 Sobic001G516600 Sobic001G516600 Sobic002G353400--Sobic001G516600 Sobic009G217600 Sobic009G217600 Sobic002G353400--Sobic009G217600 Sobic001G525400 Sobic001G525400 Sobic002G353400--Sobic001G525400 Sobic002G294700 Sobic002G294700 Sobic002G353400--Sobic002G294700 Sobic009G027900 Sobic009G027900 Sobic002G353400--Sobic009G027900 Sobic003G039600 Sobic003G039600 Sobic002G325800--Sobic003G039600 Sobic007G157900 Sobic007G157900 Sobic002G325800--Sobic007G157900 Sobic002G325800--Sobic002G232800 Sobic007G149800 Sobic007G149800 Sobic002G325800--Sobic007G149800 Sobic002G024000 Sobic002G024000 Sobic002G325800--Sobic002G024000 Sobic005G211400 Sobic005G211400 Sobic002G325800--Sobic005G211400 Sobic002G325800--Sobic004G076100 Sobic004G232400 Sobic004G232400 Sobic002G325800--Sobic004G232400 Sobic009G241700 Sobic009G241700 Sobic002G325800--Sobic009G241700 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G095700 Sobic001G095700 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic003G341100--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic001G489500 Sobic001G489500 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic002G323900 Sobic002G323900 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic003G353800--Sobic009G217600 Sobic003G353800--Sobic001G341600 Sobic001G441100 Sobic001G441100 Sobic003G353800--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic003G353800--Sobic001G035000 Sobic002G278500 Sobic002G278500 Sobic003G353800--Sobic002G278500 Sobic001G077400 Sobic001G077400 Sobic003G353800--Sobic001G077400 Sobic003G353800--Sobic009G217500 Sobic008G042900 Sobic008G042900 Sobic003G353800--Sobic008G042900 Sobic003G353800--Sobic003G416500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.