Gene annotation
Transcriptome id Sobic.004G109200.1
Synonym Sb04g008930
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YNX1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF165
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G18930 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15000.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.003G095700 glycosyltransferase, putative, expressed -
4 Sobic.001G208600 receptor kinase like protein, putative, expressed -
5 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
6 Sobic.001G012300 "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed K13027: tyrosine N-monooxygenase
7 Sobic.008G116400 acyl carrier protein, putative, expressed -
8 Sobic.001G334900 X8 domain containing protein, expressed -
9 Sobic.001G345900 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
11 Sobic.001G012500 similar to Glutathione S transferase 1(PubMedID : 24655390)@"Glutathione S transferase 1, up-regulated under all the stress condition"(PubMedID : 24655390)@similar to Glutathione S transferase 1(PubMedID : 24655390)@Glutathione S transferase 1(PubMedID : 24655390)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.009G115100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
13 Sobic.006G038200 receptor protein kinase, putative, expressed -
14 Sobic.009G033400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.003G157300 GATA zinc finger domain containing protein, expressed -
16 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
17 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
18 Sobic.003G248300 kinase, pfkB family, putative, expressed K00852: rbsK, ribokinase
19 Sobic.008G072600 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
20 Sobic.001G042301 - -


Gene co-expression network
sample Sobic004G109200 Sobic004G109200 Sobic008G164900 Sobic008G164900 Sobic004G109200--Sobic008G164900 Sobic001G012600 Sobic001G012600 Sobic004G109200--Sobic001G012600 Sobic003G095700 Sobic003G095700 Sobic004G109200--Sobic003G095700 Sobic001G208600 Sobic001G208600 Sobic004G109200--Sobic001G208600 Sobic002G347300 Sobic002G347300 Sobic004G109200--Sobic002G347300 Sobic001G012300 Sobic001G012300 Sobic004G109200--Sobic001G012300 Sobic008G116400 Sobic008G116400 Sobic004G109200--Sobic008G116400 Sobic001G334900 Sobic001G334900 Sobic004G109200--Sobic001G334900 Sobic001G345900 Sobic001G345900 Sobic004G109200--Sobic001G345900 Sobic008G163000 Sobic008G163000 Sobic008G164900--Sobic008G163000 Sobic002G072200 Sobic002G072200 Sobic008G164900--Sobic002G072200 Sobic010G086800 Sobic010G086800 Sobic008G164900--Sobic010G086800 Sobic003G062000 Sobic003G062000 Sobic008G164900--Sobic003G062000 Sobic008G164900--Sobic001G334900 Sobic004G168700 Sobic004G168700 Sobic008G164900--Sobic004G168700 Sobic008G164900--Sobic001G208600 Sobic007G090424 Sobic007G090424 Sobic008G164900--Sobic007G090424 Sobic008G164900--Sobic001G345900 Sobic001G012200 Sobic001G012200 Sobic001G012600--Sobic001G012200 Sobic001G012600--Sobic001G334900 Sobic001G012600--Sobic001G012300 Sobic001G012600--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic001G012600--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic001G012600--Sobic001G012500 Sobic009G232200 Sobic009G232200 Sobic001G012600--Sobic009G232200 Sobic001G012600--Sobic001G345900 Sobic004G257700 Sobic004G257700 Sobic001G012600--Sobic004G257700 Sobic003G428300 Sobic003G428300 Sobic003G095700--Sobic003G428300 Sobic009G017500 Sobic009G017500 Sobic003G095700--Sobic009G017500 Sobic007G147800 Sobic007G147800 Sobic003G095700--Sobic007G147800 Sobic003G095700--Sobic001G208600 Sobic006G256200 Sobic006G256200 Sobic003G095700--Sobic006G256200 Sobic008G072600 Sobic008G072600 Sobic003G095700--Sobic008G072600 Sobic004G007600 Sobic004G007600 Sobic003G095700--Sobic004G007600 Sobic004G178000 Sobic004G178000 Sobic003G095700--Sobic004G178000 Sobic009G236100 Sobic009G236100 Sobic003G095700--Sobic009G236100 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic006G075000 Sobic006G075000 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic003G352700 Sobic003G352700 Sobic001G208600--Sobic003G352700 Sobic002G347300--Sobic001G012400 Sobic002G347300--Sobic001G012600 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic009G221900 Sobic009G221900 Sobic002G347300--Sobic009G221900 Sobic002G347300--Sobic003G099166 Sobic002G347300--Sobic002G053900 Sobic002G338400 Sobic002G338400 Sobic002G347300--Sobic002G338400 Sobic001G012300--Sobic001G012200 Sobic001G012300--Sobic001G012600 Sobic005G165400 Sobic005G165400 Sobic001G012300--Sobic005G165400 Sobic001G012300--Sobic001G334900 Sobic007G181000 Sobic007G181000 Sobic001G012300--Sobic007G181000 Sobic001G012300--Sobic001G012400 Sobic003G068300 Sobic003G068300 Sobic001G012300--Sobic003G068300 Sobic005G218700 Sobic005G218700 Sobic001G012300--Sobic005G218700 Sobic001G255300 Sobic001G255300 Sobic001G012300--Sobic001G255300 Sobic001G376700 Sobic001G376700 Sobic008G116400--Sobic001G376700 Sobic009G180800 Sobic009G180800 Sobic008G116400--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic008G116400--Sobic008G123600 Sobic005G056201 Sobic005G056201 Sobic008G116400--Sobic005G056201 Sobic007G211100 Sobic007G211100 Sobic008G116400--Sobic007G211100 Sobic001G323801 Sobic001G323801 Sobic008G116400--Sobic001G323801 Sobic006G084500 Sobic006G084500 Sobic008G116400--Sobic006G084500 Sobic001G069500 Sobic001G069500 Sobic008G116400--Sobic001G069500 Sobic003G295800 Sobic003G295800 Sobic008G116400--Sobic003G295800 Sobic001G334900--Sobic009G232200 Sobic001G334900--Sobic001G012600 Sobic010G228100 Sobic010G228100 Sobic001G334900--Sobic010G228100 Sobic001G334900--Sobic001G208600 Sobic009G033400 Sobic009G033400 Sobic001G334900--Sobic009G033400 Sobic001G334900--Sobic002G347300 Sobic007G050600 Sobic007G050600 Sobic001G334900--Sobic007G050600 Sobic001G334900--Sobic001G012200 Sobic009G063400 Sobic009G063400 Sobic001G334900--Sobic009G063400 Sobic001G345900--Sobic001G334900 Sobic001G345900--Sobic002G347300 Sobic001G345900--Sobic001G012200 Sobic001G345900--Sobic001G012600 Sobic001G345900--Sobic002G072200 Sobic001G345900--Sobic004G257700 Sobic004G328601 Sobic004G328601 Sobic001G345900--Sobic004G328601 Sobic001G345900--Sobic009G033400 Sobic001G345900--Sobic001G012300
Octagon: transcription factors


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