Gene annotation
Transcriptome id Sobic.003G157300.3
Synonym GATA23, Sb03g013700
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt A0A1B6Q3G9
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF203
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G49300 : GATA transcription factor 16
RAP-DB (Rice) LOC_Os01g24070.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036176 , Zm00025a024476
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G157300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G131400 thioesterase family protein, putative, expressed -
2 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
3 Sobic.002G350700 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
4 Sobic.006G210800 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
5 Sobic.002G255200 BHLH transcription factor, putative, expressed -
6 Sobic.007G052700 acyl CoA binding protein, putative, expressed K08762: DBI, diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein)
7 Sobic.009G114500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
8 Sobic.003G075000 expressed protein -
9 Sobic.003G144900 expressed protein -
10 Sobic.005G044000 harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.001G139001 - -
12 Sobic.006G149000 expressed protein -
13 Sobic.001G170700 OsSub30 - Putative Subtilisin homologue, expressed -
14 Sobic.004G085200 protein of unknown function domain containing protein, expressed -
15 Sobic.005G168700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.003G341600 prenylated rab acceptor, putative, expressed -
17 Sobic.007G147800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
18 Sobic.001G447400 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
19 Sobic.001G429900 phospholipase A2, putative, expressed -
20 Sobic.007G211500 expressed protein -


Gene co-expression network
sample Sobic003G157300 Sobic003G157300 Sobic001G131400 Sobic001G131400 Sobic003G157300--Sobic001G131400 Sobic001G116700 Sobic001G116700 Sobic003G157300--Sobic001G116700 Sobic002G350700 Sobic002G350700 Sobic003G157300--Sobic002G350700 Sobic006G210800 Sobic006G210800 Sobic003G157300--Sobic006G210800 Sobic002G255200 Sobic002G255200 Sobic003G157300--Sobic002G255200 Sobic007G052700 Sobic007G052700 Sobic003G157300--Sobic007G052700 Sobic009G114500 Sobic009G114500 Sobic003G157300--Sobic009G114500 Sobic003G075000 Sobic003G075000 Sobic003G157300--Sobic003G075000 Sobic003G144900 Sobic003G144900 Sobic003G157300--Sobic003G144900 Sobic006G180200 Sobic006G180200 Sobic001G131400--Sobic006G180200 Sobic001G353600 Sobic001G353600 Sobic001G131400--Sobic001G353600 Sobic010G178200 Sobic010G178200 Sobic001G131400--Sobic010G178200 Sobic009G038100 Sobic009G038100 Sobic001G131400--Sobic009G038100 Sobic001G074300 Sobic001G074300 Sobic001G131400--Sobic001G074300 Sobic009G176000 Sobic009G176000 Sobic001G131400--Sobic009G176000 Sobic004G151400 Sobic004G151400 Sobic001G131400--Sobic004G151400 Sobic008G189300 Sobic008G189300 Sobic001G131400--Sobic008G189300 Sobic010G135000 Sobic010G135000 Sobic001G131400--Sobic010G135000 Sobic001G304400 Sobic001G304400 Sobic001G116700--Sobic001G304400 Sobic001G034700 Sobic001G034700 Sobic001G116700--Sobic001G034700 Sobic001G432000 Sobic001G432000 Sobic001G116700--Sobic001G432000 Sobic008G129400 Sobic008G129400 Sobic001G116700--Sobic008G129400 Sobic010G018400 Sobic010G018400 Sobic001G116700--Sobic010G018400 Sobic009G062000 Sobic009G062000 Sobic001G116700--Sobic009G062000 Sobic004G026400 Sobic004G026400 Sobic001G116700--Sobic004G026400 Sobic010G041600 Sobic010G041600 Sobic001G116700--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic001G116700--Sobic003G150000 Sobic001G161601 Sobic001G161601 Sobic002G350700--Sobic001G161601 Sobic001G059700 Sobic001G059700 Sobic002G350700--Sobic001G059700 Sobic010G085800 Sobic010G085800 Sobic002G350700--Sobic010G085800 Sobic001G112100 Sobic001G112100 Sobic002G350700--Sobic001G112100 Sobic009G232100 Sobic009G232100 Sobic002G350700--Sobic009G232100 Sobic009G088900 Sobic009G088900 Sobic002G350700--Sobic009G088900 Sobic001G159900 Sobic001G159900 Sobic002G350700--Sobic001G159900 Sobic004G055100 Sobic004G055100 Sobic002G350700--Sobic004G055100 Sobic001G264700 Sobic001G264700 Sobic002G350700--Sobic001G264700 Sobic009G180800 Sobic009G180800 Sobic006G210800--Sobic009G180800 Sobic001G203000 Sobic001G203000 Sobic006G210800--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic006G210800--Sobic008G051000 Sobic007G116950 Sobic007G116950 Sobic006G210800--Sobic007G116950 Sobic004G234200 Sobic004G234200 Sobic006G210800--Sobic004G234200 Sobic004G238500 Sobic004G238500 Sobic006G210800--Sobic004G238500 Sobic001G382100 Sobic001G382100 Sobic006G210800--Sobic001G382100 Sobic004G114800 Sobic004G114800 Sobic006G210800--Sobic004G114800 Sobic004G054500 Sobic004G054500 Sobic006G210800--Sobic004G054500 Sobic004G075000 Sobic004G075000 Sobic002G255200--Sobic004G075000 Sobic007G051000 Sobic007G051000 Sobic002G255200--Sobic007G051000 Sobic003G393700 Sobic003G393700 Sobic002G255200--Sobic003G393700 Sobic009G077800 Sobic009G077800 Sobic002G255200--Sobic009G077800 Sobic001G119400 Sobic001G119400 Sobic002G255200--Sobic001G119400 Sobic003G211200 Sobic003G211200 Sobic002G255200--Sobic003G211200 Sobic002G187500 Sobic002G187500 Sobic002G255200--Sobic002G187500 Sobic003G072300 Sobic003G072300 Sobic002G255200--Sobic003G072300 Sobic002G255200--Sobic009G176000 Sobic004G236300 Sobic004G236300 Sobic007G052700--Sobic004G236300 Sobic001G139001 Sobic001G139001 Sobic007G052700--Sobic001G139001 Sobic006G100600 Sobic006G100600 Sobic007G052700--Sobic006G100600 Sobic006G025900 Sobic006G025900 Sobic007G052700--Sobic006G025900 Sobic009G017800 Sobic009G017800 Sobic007G052700--Sobic009G017800 Sobic007G052700--Sobic001G131400 Sobic001G012500 Sobic001G012500 Sobic007G052700--Sobic001G012500 Sobic001G388600 Sobic001G388600 Sobic007G052700--Sobic001G388600 Sobic007G147800 Sobic007G147800 Sobic007G052700--Sobic007G147800 Sobic009G114500--Sobic004G151400 Sobic009G114500--Sobic001G131400 Sobic002G073800 Sobic002G073800 Sobic009G114500--Sobic002G073800 Sobic004G196300 Sobic004G196300 Sobic009G114500--Sobic004G196300 Sobic009G114500--Sobic009G062000 Sobic010G237000 Sobic010G237000 Sobic009G114500--Sobic010G237000 Sobic002G335300 Sobic002G335300 Sobic009G114500--Sobic002G335300 Sobic009G114500--Sobic010G018400 Sobic004G293100 Sobic004G293100 Sobic009G114500--Sobic004G293100 Sobic001G024500 Sobic001G024500 Sobic003G075000--Sobic001G024500 Sobic003G075000--Sobic001G131400 Sobic003G075000--Sobic006G100600 Sobic007G194700 Sobic007G194700 Sobic003G075000--Sobic007G194700 Sobic002G345850 Sobic002G345850 Sobic003G075000--Sobic002G345850 Sobic005G107300 Sobic005G107300 Sobic003G075000--Sobic005G107300 Sobic001G087900 Sobic001G087900 Sobic003G075000--Sobic001G087900 Sobic001G072800 Sobic001G072800 Sobic003G075000--Sobic001G072800 Sobic002G066400 Sobic002G066400 Sobic003G075000--Sobic002G066400 Sobic001G477300 Sobic001G477300 Sobic003G144900--Sobic001G477300 Sobic004G171400 Sobic004G171400 Sobic003G144900--Sobic004G171400 Sobic001G367600 Sobic001G367600 Sobic003G144900--Sobic001G367600 Sobic002G192000 Sobic002G192000 Sobic003G144900--Sobic002G192000 Sobic009G159400 Sobic009G159400 Sobic003G144900--Sobic009G159400 Sobic009G023200 Sobic009G023200 Sobic003G144900--Sobic009G023200 Sobic001G481100 Sobic001G481100 Sobic003G144900--Sobic001G481100 Sobic007G074000 Sobic007G074000 Sobic003G144900--Sobic007G074000 Sobic003G144900--Sobic003G393700
Octagon: transcription factors


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