Gene annotation
Transcriptome id Sobic.004G143900.1
Synonym Sb04g018290
Functional annotation indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
UniProt C5Y188
Pfam PF00218
Panther DB PTHR22854 PTHR22854:SF13
NCBI CDD KOG4201; Anthranilate synthase component II
KEGG Orthology K01609; indole-3-glycerol phosphate synthase
Gene Ontology GO:0004425; indole-3-glycerol-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT2G04400 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os08g23150.1 : indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054968
Brachypodium PNT62846 , KQJ82078
Barley HORVU7Hr1G114660.15 , HORVU7Hr1G114660.14 , HORVU7Hr1G114660.13 , HORVU7Hr1G114660.12 , HORVU7Hr1G114660.11 , HORVU7Hr1G114660.10 , HORVU7Hr1G114660.9 , HORVU7Hr1G114660.8 , HORVU7Hr1G114660.7 , HORVU7Hr1G114660.6 , HORVU7Hr1G114660.4 , HORVU7Hr1G114660.3 , HORVU7Hr1G114660.5 , HORVU7Hr1G114660.1 , HORVU7Hr1G114660.2
Wheat TraesCS7D02G501700 , TraesCS7A02G512300 , TraesCS7B02G423900
Populus -


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cDNA sequences
Sobic.004G143900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G218000 VIP1 protein, putative, expressed -
2 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
3 Sobic.007G003100 transmembrane protein 18, putative, expressed -
4 Sobic.006G050100 expressed protein -
5 Sobic.003G040700 choline/ethanolamine kinase, putative, expressed K14156: choline/ethanolamine kinase
6 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
7 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
8 Sobic.004G100100 expressed protein -
9 Sobic.010G225201 - -
10 Sobic.006G128200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Kinase(PubMedID : 30367619)@protein kinase, putative, expressed -
11 Sobic.006G208200 GHMP kinases ATP-binding protein, putative, expressed K18677: galacturonokinase
12 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
13 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
14 Sobic.004G186300 protein phosphotase protein, putative, expressed -
15 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
16 Sobic.003G294900 expressed protein -
17 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
18 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
19 Sobic.001G449000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@haemolysin-III, putative, expressed K07297: adiponectin receptor
20 Sobic.003G167000 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic004G143900 Sobic004G143900 Sobic009G218000 Sobic009G218000 Sobic004G143900--Sobic009G218000 Sobic001G309200 Sobic001G309200 Sobic004G143900--Sobic001G309200 Sobic007G003100 Sobic007G003100 Sobic004G143900--Sobic007G003100 Sobic006G050100 Sobic006G050100 Sobic004G143900--Sobic006G050100 Sobic003G040700 Sobic003G040700 Sobic004G143900--Sobic003G040700 Sobic002G217500 Sobic002G217500 Sobic004G143900--Sobic002G217500 Sobic001G073700 Sobic001G073700 Sobic004G143900--Sobic001G073700 Sobic004G100100 Sobic004G100100 Sobic004G143900--Sobic004G100100 Sobic010G225201 Sobic010G225201 Sobic004G143900--Sobic010G225201 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic009G218000--Sobic001G309200 Sobic003G167000 Sobic003G167000 Sobic009G218000--Sobic003G167000 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic001G352800 Sobic001G352800 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic008G011800 Sobic008G011800 Sobic009G218000--Sobic008G011800 Sobic002G348400 Sobic002G348400 Sobic001G309200--Sobic002G348400 Sobic001G188000 Sobic001G188000 Sobic001G309200--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic001G309200--Sobic003G260600 Sobic001G117900 Sobic001G117900 Sobic001G309200--Sobic001G117900 Sobic009G066200 Sobic009G066200 Sobic001G309200--Sobic009G066200 Sobic002G308000 Sobic002G308000 Sobic001G309200--Sobic002G308000 Sobic002G392400 Sobic002G392400 Sobic001G309200--Sobic002G392400 Sobic010G153400 Sobic010G153400 Sobic001G309200--Sobic010G153400 Sobic007G086600 Sobic007G086600 Sobic001G309200--Sobic007G086600 Sobic004G039400 Sobic004G039400 Sobic007G003100--Sobic004G039400 Sobic007G048700 Sobic007G048700 Sobic007G003100--Sobic007G048700 Sobic007G003100--Sobic003G167000 Sobic009G112900 Sobic009G112900 Sobic007G003100--Sobic009G112900 Sobic001G443200 Sobic001G443200 Sobic007G003100--Sobic001G443200 Sobic009G206600 Sobic009G206600 Sobic007G003100--Sobic009G206600 Sobic001G060300 Sobic001G060300 Sobic007G003100--Sobic001G060300 Sobic006G203900 Sobic006G203900 Sobic007G003100--Sobic006G203900 Sobic010G040900 Sobic010G040900 Sobic007G003100--Sobic010G040900 Sobic006G050100--Sobic001G073700 Sobic002G362500 Sobic002G362500 Sobic006G050100--Sobic002G362500 Sobic001G322400 Sobic001G322400 Sobic006G050100--Sobic001G322400 Sobic008G141100 Sobic008G141100 Sobic006G050100--Sobic008G141100 Sobic006G156400 Sobic006G156400 Sobic006G050100--Sobic006G156400 Sobic009G025700 Sobic009G025700 Sobic006G050100--Sobic009G025700 Sobic001G072000 Sobic001G072000 Sobic006G050100--Sobic001G072000 Sobic009G098700 Sobic009G098700 Sobic006G050100--Sobic009G098700 Sobic010G073900 Sobic010G073900 Sobic006G050100--Sobic010G073900 Sobic003G040700--Sobic002G362500 Sobic004G074900 Sobic004G074900 Sobic003G040700--Sobic004G074900 Sobic007G138000 Sobic007G138000 Sobic003G040700--Sobic007G138000 Sobic007G101600 Sobic007G101600 Sobic003G040700--Sobic007G101600 Sobic004G062200 Sobic004G062200 Sobic003G040700--Sobic004G062200 Sobic007G039200 Sobic007G039200 Sobic003G040700--Sobic007G039200 Sobic006G267100 Sobic006G267100 Sobic003G040700--Sobic006G267100 Sobic003G040700--Sobic001G073700 Sobic002G389600 Sobic002G389600 Sobic003G040700--Sobic002G389600 Sobic003G016300 Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic002G217500--Sobic002G352200 Sobic002G255400 Sobic002G255400 Sobic002G217500--Sobic002G255400 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic002G217500--Sobic009G218000 Sobic009G201000 Sobic009G201000 Sobic001G073700--Sobic009G201000 Sobic001G073700--Sobic002G362500 Sobic001G073700--Sobic006G156400 Sobic001G073700--Sobic001G322400 Sobic001G073700--Sobic006G050100 Sobic003G352900 Sobic003G352900 Sobic001G073700--Sobic003G352900 Sobic008G166100 Sobic008G166100 Sobic001G073700--Sobic008G166100 Sobic001G073700--Sobic001G072000 Sobic001G073700--Sobic008G141100 Sobic004G100100--Sobic003G260600 Sobic004G100100--Sobic002G255400 Sobic003G284100 Sobic003G284100 Sobic004G100100--Sobic003G284100 Sobic007G014700 Sobic007G014700 Sobic004G100100--Sobic007G014700 Sobic001G282200 Sobic001G282200 Sobic004G100100--Sobic001G282200 Sobic004G100100--Sobic006G153200 Sobic004G100100--Sobic008G018300 Sobic003G013700 Sobic003G013700 Sobic004G100100--Sobic003G013700 Sobic004G100100--Sobic001G309200 Sobic002G034750 Sobic002G034750 Sobic010G225201--Sobic002G034750 Sobic010G039000 Sobic010G039000 Sobic010G225201--Sobic010G039000 Sobic001G504500 Sobic001G504500 Sobic010G225201--Sobic001G504500 Sobic008G006000 Sobic008G006000 Sobic010G225201--Sobic008G006000 Sobic010G255900 Sobic010G255900 Sobic010G225201--Sobic010G255900 Sobic002G397900 Sobic002G397900 Sobic010G225201--Sobic002G397900 Sobic010G225201--Sobic004G100100 Sobic005G170000 Sobic005G170000 Sobic010G225201--Sobic005G170000 Sobic007G219500 Sobic007G219500 Sobic010G225201--Sobic007G219500
Octagon: transcription factors


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