Gene annotation
Transcriptome id Sobic.004G251100.1
Synonym Sb04g029060
Functional annotation RING finger protein, putative, expressed
UniProt C5XZD6
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF103
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G18773 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g49710.1 : RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a021901
Brachypodium KQK01486 , KQK01488
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G287000 rho-GTPase-activating protein-related, putative, expressed -
2 Sobic.003G288000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
3 Sobic.008G158200 - -
4 Sobic.003G125500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_CR4L.2 - The CR4L subfamily has homology with Crinkly4, expressed -
5 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
6 Sobic.004G245500 expressed protein -
7 Sobic.008G050500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G128300 MLA6 protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
9 Sobic.001G354200 O-methyltransferase, putative, expressed -
10 Sobic.007G151600 plant viral response family protein, putative, expressed -
11 Sobic.003G024900 carnitine racemase like protein, putative, expressed -
12 Sobic.001G319200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.009G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G229000 expressed protein -
15 Sobic.005G202400 integral membrane protein TIGR01569 containing protein, expressed -
16 Sobic.004G286000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
17 Sobic.010G015300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
18 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
19 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
20 Sobic.006G092500 expressed protein -


Gene co-expression network
sample Sobic004G251100 Sobic004G251100 Sobic004G287000 Sobic004G287000 Sobic004G251100--Sobic004G287000 Sobic003G288000 Sobic003G288000 Sobic004G251100--Sobic003G288000 Sobic008G158200 Sobic008G158200 Sobic004G251100--Sobic008G158200 Sobic003G125500 Sobic003G125500 Sobic004G251100--Sobic003G125500 Sobic004G195000 Sobic004G195000 Sobic004G251100--Sobic004G195000 Sobic004G245500 Sobic004G245500 Sobic004G251100--Sobic004G245500 Sobic008G050500 Sobic008G050500 Sobic004G251100--Sobic008G050500 Sobic002G128300 Sobic002G128300 Sobic004G251100--Sobic002G128300 Sobic001G354200 Sobic001G354200 Sobic004G251100--Sobic001G354200 Sobic005G013600 Sobic005G013600 Sobic004G287000--Sobic005G013600 Sobic004G287000--Sobic008G050500 Sobic002G235500 Sobic002G235500 Sobic004G287000--Sobic002G235500 Sobic004G260300 Sobic004G260300 Sobic004G287000--Sobic004G260300 Sobic001G021900 Sobic001G021900 Sobic004G287000--Sobic001G021900 Sobic006G149400 Sobic006G149400 Sobic004G287000--Sobic006G149400 Sobic003G288100 Sobic003G288100 Sobic004G287000--Sobic003G288100 Sobic010G213800 Sobic010G213800 Sobic004G287000--Sobic010G213800 Sobic004G145900 Sobic004G145900 Sobic004G287000--Sobic004G145900 Sobic003G297600 Sobic003G297600 Sobic003G288000--Sobic003G297600 Sobic005G051200 Sobic005G051200 Sobic003G288000--Sobic005G051200 Sobic001G252300 Sobic001G252300 Sobic003G288000--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic003G288000--Sobic009G229000 Sobic002G261000 Sobic002G261000 Sobic003G288000--Sobic002G261000 Sobic002G416600 Sobic002G416600 Sobic003G288000--Sobic002G416600 Sobic001G317200 Sobic001G317200 Sobic003G288000--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic003G288000--Sobic009G035200 Sobic008G050600 Sobic008G050600 Sobic003G288000--Sobic008G050600 Sobic010G272300 Sobic010G272300 Sobic008G158200--Sobic010G272300 Sobic001G082600 Sobic001G082600 Sobic008G158200--Sobic001G082600 Sobic005G043000 Sobic005G043000 Sobic008G158200--Sobic005G043000 Sobic005G063300 Sobic005G063300 Sobic008G158200--Sobic005G063300 Sobic003G079400 Sobic003G079400 Sobic008G158200--Sobic003G079400 Sobic007G215900 Sobic007G215900 Sobic008G158200--Sobic007G215900 Sobic005G168800 Sobic005G168800 Sobic008G158200--Sobic005G168800 Sobic006G059700 Sobic006G059700 Sobic008G158200--Sobic006G059700 Sobic001G243600 Sobic001G243600 Sobic008G158200--Sobic001G243600 Sobic010G267100 Sobic010G267100 Sobic003G125500--Sobic010G267100 Sobic010G122400 Sobic010G122400 Sobic003G125500--Sobic010G122400 Sobic003G125500--Sobic004G251100 Sobic003G253200 Sobic003G253200 Sobic003G125500--Sobic003G253200 Sobic003G024900 Sobic003G024900 Sobic003G125500--Sobic003G024900 Sobic002G024000 Sobic002G024000 Sobic003G125500--Sobic002G024000 Sobic006G058400 Sobic006G058400 Sobic003G125500--Sobic006G058400 Sobic010G099000 Sobic010G099000 Sobic003G125500--Sobic010G099000 Sobic001G319200 Sobic001G319200 Sobic003G125500--Sobic001G319200 Sobic004G195000--Sobic001G319200 Sobic006G246100 Sobic006G246100 Sobic004G195000--Sobic006G246100 Sobic003G277500 Sobic003G277500 Sobic004G195000--Sobic003G277500 Sobic005G080200 Sobic005G080200 Sobic004G195000--Sobic005G080200 Sobic003G296300 Sobic003G296300 Sobic004G195000--Sobic003G296300 Sobic002G407700 Sobic002G407700 Sobic004G195000--Sobic002G407700 Sobic001G403300 Sobic001G403300 Sobic004G195000--Sobic001G403300 Sobic002G377100 Sobic002G377100 Sobic004G195000--Sobic002G377100 Sobic005G155600 Sobic005G155600 Sobic004G195000--Sobic005G155600 Sobic004G245500--Sobic005G051200 Sobic004G245500--Sobic002G416600 Sobic003G088500 Sobic003G088500 Sobic004G245500--Sobic003G088500 Sobic003G087300 Sobic003G087300 Sobic004G245500--Sobic003G087300 Sobic009G164600 Sobic009G164600 Sobic004G245500--Sobic009G164600 Sobic001G025101 Sobic001G025101 Sobic004G245500--Sobic001G025101 Sobic004G245500--Sobic001G252300 Sobic004G245500--Sobic001G317200 Sobic004G166700 Sobic004G166700 Sobic004G245500--Sobic004G166700 Sobic009G065500 Sobic009G065500 Sobic008G050500--Sobic009G065500 Sobic008G050500--Sobic009G164600 Sobic001G325000 Sobic001G325000 Sobic008G050500--Sobic001G325000 Sobic001G481500 Sobic001G481500 Sobic008G050500--Sobic001G481500 Sobic010G032100 Sobic010G032100 Sobic008G050500--Sobic010G032100 Sobic001G397200 Sobic001G397200 Sobic008G050500--Sobic001G397200 Sobic007G166000 Sobic007G166000 Sobic008G050500--Sobic007G166000 Sobic004G336500 Sobic004G336500 Sobic008G050500--Sobic004G336500 Sobic004G166200 Sobic004G166200 Sobic008G050500--Sobic004G166200 Sobic006G153100 Sobic006G153100 Sobic002G128300--Sobic006G153100 Sobic005G179200 Sobic005G179200 Sobic002G128300--Sobic005G179200 Sobic001G444400 Sobic001G444400 Sobic002G128300--Sobic001G444400 Sobic002G128300--Sobic001G243600 Sobic009G120000 Sobic009G120000 Sobic002G128300--Sobic009G120000 Sobic004G111800 Sobic004G111800 Sobic002G128300--Sobic004G111800 Sobic003G236450 Sobic003G236450 Sobic002G128300--Sobic003G236450 Sobic001G063000 Sobic001G063000 Sobic002G128300--Sobic001G063000 Sobic007G141500 Sobic007G141500 Sobic002G128300--Sobic007G141500 Sobic006G032700 Sobic006G032700 Sobic001G354200--Sobic006G032700 Sobic001G354200--Sobic001G397200 Sobic010G275100 Sobic010G275100 Sobic001G354200--Sobic010G275100 Sobic001G354200--Sobic010G032100 Sobic003G138300 Sobic003G138300 Sobic001G354200--Sobic003G138300 Sobic001G354200--Sobic001G481500 Sobic001G309600 Sobic001G309600 Sobic001G354200--Sobic001G309600 Sobic001G354200--Sobic004G245500 Sobic001G354200--Sobic009G229000
Octagon: transcription factors


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