Gene annotation
Transcriptome id Sobic.004G283400.1
Synonym
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A194YS03
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF160
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G16720 : TOXICOS EN LEVADURA 2
RAP-DB (Rice) LOC_Os02g45390.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a032312
Brachypodium KQK00756
Barley HORVU6Hr1G065420.3 , HORVU6Hr1G065420.2 , HORVU6Hr1G065420.1
Wheat TraesCS6A02G256500 , TraesCS6D02G237700 , TraesCS6B02G268900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAS family transcription factor domain containing protein, expressed -
2 Sobic.010G118100 protein kinase, putative, expressed -
3 Sobic.003G219100 expressed protein -
4 Sobic.004G253900 BSD domain-containing protein, putative, expressed -
5 Sobic.007G196400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
6 Sobic.001G363300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.001G095750 - -
9 Sobic.001G045000 CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.001G044800 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
11 Sobic.007G224300 RING finger protein, putative, expressed -
12 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G090600 expressed protein -
14 Sobic.004G275100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G225900 expressed protein -
16 Sobic.001G340700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@EARLY flowering protein, putative, expressed -
17 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
18 Sobic.003G248901 - -
19 Sobic.006G159800 DTA2, putative, expressed -
20 Sobic.003G138400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY9, expressed -


Gene co-expression network
sample Sobic004G283400 Sobic004G283400 Sobic001G109100 Sobic001G109100 Sobic004G283400--Sobic001G109100 Sobic010G118100 Sobic010G118100 Sobic004G283400--Sobic010G118100 Sobic003G219100 Sobic003G219100 Sobic004G283400--Sobic003G219100 Sobic004G253900 Sobic004G253900 Sobic004G283400--Sobic004G253900 Sobic007G196400 Sobic007G196400 Sobic004G283400--Sobic007G196400 Sobic001G363300 Sobic001G363300 Sobic004G283400--Sobic001G363300 Sobic001G161200 Sobic001G161200 Sobic004G283400--Sobic001G161200 Sobic001G095750 Sobic001G095750 Sobic004G283400--Sobic001G095750 Sobic001G045000 Sobic001G045000 Sobic004G283400--Sobic001G045000 Sobic004G337500 Sobic004G337500 Sobic001G109100--Sobic004G337500 Sobic002G192101 Sobic002G192101 Sobic001G109100--Sobic002G192101 Sobic001G109100--Sobic004G283400 Sobic008G166700 Sobic008G166700 Sobic001G109100--Sobic008G166700 Sobic005G090600 Sobic005G090600 Sobic001G109100--Sobic005G090600 Sobic007G136700 Sobic007G136700 Sobic001G109100--Sobic007G136700 Sobic001G044800 Sobic001G044800 Sobic001G109100--Sobic001G044800 Sobic004G281300 Sobic004G281300 Sobic001G109100--Sobic004G281300 Sobic008G059400 Sobic008G059400 Sobic001G109100--Sobic008G059400 Sobic010G118100--Sobic004G253900 Sobic005G175300 Sobic005G175300 Sobic010G118100--Sobic005G175300 Sobic006G261300 Sobic006G261300 Sobic010G118100--Sobic006G261300 Sobic010G009400 Sobic010G009400 Sobic010G118100--Sobic010G009400 Sobic010G118100--Sobic004G283400 Sobic009G190800 Sobic009G190800 Sobic010G118100--Sobic009G190800 Sobic002G431600 Sobic002G431600 Sobic010G118100--Sobic002G431600 Sobic010G185600 Sobic010G185600 Sobic010G118100--Sobic010G185600 Sobic003G359900 Sobic003G359900 Sobic010G118100--Sobic003G359900 Sobic009G093200 Sobic009G093200 Sobic003G219100--Sobic009G093200 Sobic004G314500 Sobic004G314500 Sobic003G219100--Sobic004G314500 Sobic001G408100 Sobic001G408100 Sobic003G219100--Sobic001G408100 Sobic008G083400 Sobic008G083400 Sobic003G219100--Sobic008G083400 Sobic003G092700 Sobic003G092700 Sobic003G219100--Sobic003G092700 Sobic003G219100--Sobic004G283400 Sobic003G052400 Sobic003G052400 Sobic003G219100--Sobic003G052400 Sobic004G249300 Sobic004G249300 Sobic003G219100--Sobic004G249300 Sobic005G090900 Sobic005G090900 Sobic003G219100--Sobic005G090900 Sobic007G132700 Sobic007G132700 Sobic004G253900--Sobic007G132700 Sobic009G174000 Sobic009G174000 Sobic004G253900--Sobic009G174000 Sobic003G299000 Sobic003G299000 Sobic004G253900--Sobic003G299000 Sobic002G131900 Sobic002G131900 Sobic004G253900--Sobic002G131900 Sobic002G301300 Sobic002G301300 Sobic004G253900--Sobic002G301300 Sobic003G077900 Sobic003G077900 Sobic004G253900--Sobic003G077900 Sobic009G219900 Sobic009G219900 Sobic004G253900--Sobic009G219900 Sobic007G013300 Sobic007G013300 Sobic004G253900--Sobic007G013300 Sobic004G253900--Sobic010G118100 Sobic007G139900 Sobic007G139900 Sobic007G196400--Sobic007G139900 Sobic001G030600 Sobic001G030600 Sobic007G196400--Sobic001G030600 Sobic010G089700 Sobic010G089700 Sobic007G196400--Sobic010G089700 Sobic004G006500 Sobic004G006500 Sobic007G196400--Sobic004G006500 Sobic007G124100 Sobic007G124100 Sobic007G196400--Sobic007G124100 Sobic009G028500 Sobic009G028500 Sobic007G196400--Sobic009G028500 Sobic009G010400 Sobic009G010400 Sobic007G196400--Sobic009G010400 Sobic007G224300 Sobic007G224300 Sobic007G196400--Sobic007G224300 Sobic002G185300 Sobic002G185300 Sobic007G196400--Sobic002G185300 Sobic008G090600 Sobic008G090600 Sobic001G363300--Sobic008G090600 Sobic005G217200 Sobic005G217200 Sobic001G363300--Sobic005G217200 Sobic010G018100 Sobic010G018100 Sobic001G363300--Sobic010G018100 Sobic003G363100 Sobic003G363100 Sobic001G363300--Sobic003G363100 Sobic008G190900 Sobic008G190900 Sobic001G363300--Sobic008G190900 Sobic003G276000 Sobic003G276000 Sobic001G363300--Sobic003G276000 Sobic001G454200 Sobic001G454200 Sobic001G363300--Sobic001G454200 Sobic001G385800 Sobic001G385800 Sobic001G363300--Sobic001G385800 Sobic002G241400 Sobic002G241400 Sobic001G363300--Sobic002G241400 Sobic001G118900 Sobic001G118900 Sobic001G161200--Sobic001G118900 Sobic006G205200 Sobic006G205200 Sobic001G161200--Sobic006G205200 Sobic002G207300 Sobic002G207300 Sobic001G161200--Sobic002G207300 Sobic004G065900 Sobic004G065900 Sobic001G161200--Sobic004G065900 Sobic003G131500 Sobic003G131500 Sobic001G161200--Sobic003G131500 Sobic001G161200--Sobic001G095750 Sobic001G216300 Sobic001G216300 Sobic001G161200--Sobic001G216300 Sobic002G367900 Sobic002G367900 Sobic001G161200--Sobic002G367900 Sobic001G041500 Sobic001G041500 Sobic001G161200--Sobic001G041500 Sobic001G095750--Sobic001G118900 Sobic001G095750--Sobic003G131500 Sobic002G189000 Sobic002G189000 Sobic001G095750--Sobic002G189000 Sobic001G314300 Sobic001G314300 Sobic001G095750--Sobic001G314300 Sobic002G137800 Sobic002G137800 Sobic001G095750--Sobic002G137800 Sobic006G114200 Sobic006G114200 Sobic001G095750--Sobic006G114200 Sobic003G234800 Sobic003G234800 Sobic001G095750--Sobic003G234800 Sobic005G087800 Sobic005G087800 Sobic001G095750--Sobic005G087800 Sobic001G095750--Sobic001G161200 Sobic001G321500 Sobic001G321500 Sobic001G045000--Sobic001G321500 Sobic005G229400 Sobic005G229400 Sobic001G045000--Sobic005G229400 Sobic010G090900 Sobic010G090900 Sobic001G045000--Sobic010G090900 Sobic004G173500 Sobic004G173500 Sobic001G045000--Sobic004G173500 Sobic006G277200 Sobic006G277200 Sobic001G045000--Sobic006G277200 Sobic002G119800 Sobic002G119800 Sobic001G045000--Sobic002G119800 Sobic001G045000--Sobic010G009400 Sobic005G129400 Sobic005G129400 Sobic001G045000--Sobic005G129400 Sobic004G214100 Sobic004G214100 Sobic001G045000--Sobic004G214100
Octagon: transcription factors


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