Gene annotation
Transcriptome id Sobic.007G196400.1
Synonym Sb07g026490
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt C5YI48
Pfam PF00575 PF00270 PF00271 PF07717 PF04408
Panther DB PTHR18934 PTHR18934:SF120
NCBI CDD -
KEGG Orthology K12818; DHX8, ATP-dependent RNA helicase DHX8/PRP22
Gene Ontology GO:0003676; nucleic acid binding GO:0005524ATP binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT3G26560 : ATP-dependent RNA helicase, putative
RAP-DB (Rice) LOC_Os06g23530.1 : pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a005235 , Zm00025a019705
Brachypodium KQJ96362
Barley -
Wheat TraesCS4A02G158200 , TraesCS4D02G147900 , TraesCS4B02G148500 , TraesCS4B02G148500 , TraesCS4D02G147900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G030600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
3 Sobic.010G089700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
4 Sobic.004G006500 expressed protein -
5 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
6 Sobic.009G028500 zinc finger family protein, putative, expressed -
7 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
8 Sobic.007G224300 RING finger protein, putative, expressed -
9 Sobic.002G185300 transporter, putative, expressed -
10 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
11 Sobic.010G097900 expressed protein -
12 Sobic.007G143400 tetraspanin family protein, putative, expressed -
13 Sobic.004G319300 lipase class 3 family protein, putative, expressed -
14 Sobic.002G418900 expressed protein -
15 Sobic.006G114200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@heavy metal associated domain containing protein, expressed -
16 Sobic.009G212800 WRKY7, expressed -
17 Sobic.001G118900 DUF292 domain containing protein, expressed -
18 Sobic.002G301800 GRAS family transcription factor domain containing protein, expressed -
19 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
20 Sobic.001G363300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic007G196400 Sobic007G196400 Sobic007G139900 Sobic007G139900 Sobic007G196400--Sobic007G139900 Sobic001G030600 Sobic001G030600 Sobic007G196400--Sobic001G030600 Sobic010G089700 Sobic010G089700 Sobic007G196400--Sobic010G089700 Sobic004G006500 Sobic004G006500 Sobic007G196400--Sobic004G006500 Sobic007G124100 Sobic007G124100 Sobic007G196400--Sobic007G124100 Sobic009G028500 Sobic009G028500 Sobic007G196400--Sobic009G028500 Sobic009G010400 Sobic009G010400 Sobic007G196400--Sobic009G010400 Sobic007G224300 Sobic007G224300 Sobic007G196400--Sobic007G224300 Sobic002G185300 Sobic002G185300 Sobic007G196400--Sobic002G185300 Sobic007G139900--Sobic009G010400 Sobic005G208900 Sobic005G208900 Sobic007G139900--Sobic005G208900 Sobic007G139900--Sobic007G224300 Sobic007G139900--Sobic007G124100 Sobic007G139900--Sobic004G006500 Sobic001G287600 Sobic001G287600 Sobic007G139900--Sobic001G287600 Sobic001G118900 Sobic001G118900 Sobic007G139900--Sobic001G118900 Sobic004G065900 Sobic004G065900 Sobic007G139900--Sobic004G065900 Sobic004G086800 Sobic004G086800 Sobic007G139900--Sobic004G086800 Sobic001G095750 Sobic001G095750 Sobic001G030600--Sobic001G095750 Sobic001G030600--Sobic004G006500 Sobic006G114200 Sobic006G114200 Sobic001G030600--Sobic006G114200 Sobic001G030600--Sobic001G118900 Sobic002G418900 Sobic002G418900 Sobic001G030600--Sobic002G418900 Sobic001G030600--Sobic007G196400 Sobic004G169900 Sobic004G169900 Sobic001G030600--Sobic004G169900 Sobic010G273700 Sobic010G273700 Sobic001G030600--Sobic010G273700 Sobic001G030600--Sobic007G139900 Sobic010G089700--Sobic009G028500 Sobic004G281300 Sobic004G281300 Sobic010G089700--Sobic004G281300 Sobic010G089700--Sobic004G006500 Sobic004G092000 Sobic004G092000 Sobic010G089700--Sobic004G092000 Sobic009G032400 Sobic009G032400 Sobic010G089700--Sobic009G032400 Sobic002G137800 Sobic002G137800 Sobic010G089700--Sobic002G137800 Sobic010G089700--Sobic002G418900 Sobic010G089700--Sobic001G095750 Sobic010G089700--Sobic007G124100 Sobic002G185200 Sobic002G185200 Sobic004G006500--Sobic002G185200 Sobic004G006500--Sobic002G418900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic004G006500--Sobic009G028500 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic004G006500--Sobic006G114200 Sobic004G006500--Sobic004G086800 Sobic002G207300 Sobic002G207300 Sobic007G124100--Sobic002G207300 Sobic007G124100--Sobic007G139900 Sobic007G124100--Sobic001G118900 Sobic002G367900 Sobic002G367900 Sobic007G124100--Sobic002G367900 Sobic001G161200 Sobic001G161200 Sobic007G124100--Sobic001G161200 Sobic007G124100--Sobic004G065900 Sobic007G124100--Sobic009G028500 Sobic004G176900 Sobic004G176900 Sobic007G124100--Sobic004G176900 Sobic003G131500 Sobic003G131500 Sobic007G124100--Sobic003G131500 Sobic009G028500--Sobic004G065900 Sobic009G028500--Sobic004G006500 Sobic009G028500--Sobic010G089700 Sobic009G028500--Sobic002G418900 Sobic009G028500--Sobic002G207300 Sobic009G028500--Sobic002G367900 Sobic009G028500--Sobic001G118900 Sobic009G028500--Sobic009G010400 Sobic009G028500--Sobic002G185200 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic009G010400--Sobic004G006500 Sobic006G094500 Sobic006G094500 Sobic007G224300--Sobic006G094500 Sobic007G224300--Sobic007G139900 Sobic008G051400 Sobic008G051400 Sobic007G224300--Sobic008G051400 Sobic002G138700 Sobic002G138700 Sobic007G224300--Sobic002G138700 Sobic009G187600 Sobic009G187600 Sobic007G224300--Sobic009G187600 Sobic009G171100 Sobic009G171100 Sobic007G224300--Sobic009G171100 Sobic004G018200 Sobic004G018200 Sobic007G224300--Sobic004G018200 Sobic010G178800 Sobic010G178800 Sobic007G224300--Sobic010G178800 Sobic001G525400 Sobic001G525400 Sobic007G224300--Sobic001G525400 Sobic003G129400 Sobic003G129400 Sobic002G185300--Sobic003G129400 Sobic004G155200 Sobic004G155200 Sobic002G185300--Sobic004G155200 Sobic001G112000 Sobic001G112000 Sobic002G185300--Sobic001G112000 Sobic004G353600 Sobic004G353600 Sobic002G185300--Sobic004G353600 Sobic009G201500 Sobic009G201500 Sobic002G185300--Sobic009G201500 Sobic007G216500 Sobic007G216500 Sobic002G185300--Sobic007G216500 Sobic002G225300 Sobic002G225300 Sobic002G185300--Sobic002G225300 Sobic003G033700 Sobic003G033700 Sobic002G185300--Sobic003G033700 Sobic001G510400 Sobic001G510400 Sobic002G185300--Sobic001G510400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.