Gene annotation
Transcriptome id Sobic.004G299200.2
Synonym Sb04g033300, chr31
Functional annotation expressed protein
UniProt A0A194YSE6 , Q9XE66
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF43
NCBI CDD KOG0390; DNA repair protein, SNF2 family
KEGG Orthology K10875; RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G05490 : chromatin remodeling 31
RAP-DB (Rice) LOC_Os02g43460.1 : required to maintain repression 1, putative, expressed
MaizeGDB (Corn) Zm00025a032174 , Zm00025a032175
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.009G211300 MATH domain containing protein, expressed -
3 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
5 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
6 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
7 Sobic.006G015100 expressed protein -
8 Sobic.003G300000 expressed protein -
9 Sobic.002G078900 agenet domain containing protein, expressed -
10 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
11 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
12 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
13 Sobic.001G459300 - -
14 Sobic.002G344201 - -
15 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.003G063700 - -
17 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
18 Sobic.006G134700 endoglucanase, putative, expressed -
19 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
20 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -


Gene co-expression network
sample Sobic004G299200 Sobic004G299200 Sobic001G158100 Sobic001G158100 Sobic004G299200--Sobic001G158100 Sobic009G211300 Sobic009G211300 Sobic004G299200--Sobic009G211300 Sobic003G092300 Sobic003G092300 Sobic004G299200--Sobic003G092300 Sobic010G183800 Sobic010G183800 Sobic004G299200--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic004G299200--Sobic001G459400 Sobic004G281000 Sobic004G281000 Sobic004G299200--Sobic004G281000 Sobic006G015100 Sobic006G015100 Sobic004G299200--Sobic006G015100 Sobic003G300000 Sobic003G300000 Sobic004G299200--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic004G299200--Sobic002G078900 Sobic009G063700 Sobic009G063700 Sobic001G158100--Sobic009G063700 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic004G056000 Sobic004G056000 Sobic001G158100--Sobic004G056000 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic009G075500 Sobic009G075500 Sobic001G158100--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic001G158100--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic001G158100--Sobic001G216400 Sobic003G063700 Sobic003G063700 Sobic009G211300--Sobic003G063700 Sobic009G211300--Sobic001G158100 Sobic006G134700 Sobic006G134700 Sobic009G211300--Sobic006G134700 Sobic001G235200 Sobic001G235200 Sobic009G211300--Sobic001G235200 Sobic009G211300--Sobic001G216400 Sobic009G211300--Sobic009G063700 Sobic009G211300--Sobic009G075500 Sobic006G213900 Sobic006G213900 Sobic009G211300--Sobic006G213900 Sobic009G211300--Sobic004G056000 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic003G092300--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic010G048600 Sobic010G048600 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic003G092300--Sobic001G158100 Sobic005G070700 Sobic005G070700 Sobic003G092300--Sobic005G070700 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic001G459400--Sobic006G015100 Sobic004G281000--Sobic010G183800 Sobic004G281000--Sobic003G300000 Sobic004G281000--Sobic009G075500 Sobic004G281000--Sobic002G078900 Sobic004G234600 Sobic004G234600 Sobic004G281000--Sobic004G234600 Sobic004G281000--Sobic001G456000 Sobic001G457600 Sobic001G457600 Sobic004G281000--Sobic001G457600 Sobic004G281000--Sobic001G071600 Sobic004G281000--Sobic001G216400 Sobic006G015100--Sobic001G459400 Sobic006G112300 Sobic006G112300 Sobic006G015100--Sobic006G112300 Sobic006G015100--Sobic003G092300 Sobic006G015100--Sobic010G183800 Sobic001G274300 Sobic001G274300 Sobic006G015100--Sobic001G274300 Sobic006G015100--Sobic001G459300 Sobic006G015100--Sobic003G300000 Sobic006G015100--Sobic001G106500 Sobic006G015100--Sobic009G075500 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.