Gene annotation
| Transcriptome id | Sobic.004G301500.2 |
|---|---|
| Synonym | Sb04g033480 |
| Functional annotation | integral membrane protein, putative, expressed |
| UniProt | A0A1Z5RPU7 |
| Pfam | PF01988 |
| Panther DB | PTHR31851 PTHR31851:SF7 |
| NCBI CDD | KOG4473; Uncharacterized membrane protein |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G43660 : Vacuolar iron transporter (VIT) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g43030.1 : integral membrane protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a020953 , Zm00025a010412 |
| Brachypodium | KQJ83808 , KQK00532 |
| Barley | HORVU6Hr1G061000.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G229500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 2 | Sobic.004G246600 | expressed protein | - |
| 3 | Sobic.009G183900 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 4 | Sobic.005G013500 | WRKY52, expressed | - |
| 5 | Sobic.006G170000 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 6 | Sobic.004G097100 | F-box family protein, putative, expressed | - |
| 7 | Sobic.006G187900 | "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed | K01762: 1-aminocyclopropane-1-carboxylate synthase |
| 8 | Sobic.003G370600 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
| 9 | Sobic.001G143100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed | - |
| 10 | Sobic.005G021800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 11 | Sobic.004G295600 | AP2 domain containing protein, expressed | - |
| 12 | Sobic.007G148500 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 13 | Sobic.002G269100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 14 | Sobic.009G205500 | harpin-induced protein 1 domain containing protein, expressed | - |
| 15 | Sobic.001G295700 | Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed | - |
| 16 | Sobic.004G229400 | phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 17 | Sobic.009G194400 | expressed protein | - |
| 18 | Sobic.004G308900 | AP2 domain containing protein, expressed | - |
| 19 | Sobic.002G234400 | white-brown complex homolog protein 11, putative, expressed | - |
| 20 | Sobic.009G032000 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
Gene co-expression network
Octagon: transcription factors
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