Gene annotation
Transcriptome id Sobic.005G021800.1
Synonym Sb05g001840
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt C5Y3Z3
Pfam PF03168
Panther DB PTHR31852 PTHR31852:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27080 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os12g03370.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013134
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
2 Sobic.004G246600 expressed protein -
3 Sobic.003G230100 expressed protein -
4 Sobic.004G097100 F-box family protein, putative, expressed -
5 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.002G358300 expressed protein -
7 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
8 Sobic.004G308900 AP2 domain containing protein, expressed -
9 Sobic.005G013500 WRKY52, expressed -
10 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
11 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
12 Sobic.007G122800 expressed protein -
13 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.001G195200 cytochrome P450, putative, expressed -
16 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
17 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.009G224200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G143100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
20 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -


Gene co-expression network
sample Sobic005G021800 Sobic005G021800 Sobic002G184300 Sobic002G184300 Sobic005G021800--Sobic002G184300 Sobic004G246600 Sobic004G246600 Sobic005G021800--Sobic004G246600 Sobic003G230100 Sobic003G230100 Sobic005G021800--Sobic003G230100 Sobic004G097100 Sobic004G097100 Sobic005G021800--Sobic004G097100 Sobic009G205500 Sobic009G205500 Sobic005G021800--Sobic009G205500 Sobic002G358300 Sobic002G358300 Sobic005G021800--Sobic002G358300 Sobic009G183900 Sobic009G183900 Sobic005G021800--Sobic009G183900 Sobic004G308900 Sobic004G308900 Sobic005G021800--Sobic004G308900 Sobic005G013500 Sobic005G013500 Sobic005G021800--Sobic005G013500 Sobic001G363400 Sobic001G363400 Sobic002G184300--Sobic001G363400 Sobic002G184300--Sobic003G230100 Sobic002G184300--Sobic002G358300 Sobic002G184300--Sobic004G097100 Sobic009G032000 Sobic009G032000 Sobic002G184300--Sobic009G032000 Sobic002G184300--Sobic009G205500 Sobic002G184300--Sobic004G246600 Sobic002G184300--Sobic005G013500 Sobic002G184300--Sobic004G308900 Sobic004G229500 Sobic004G229500 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic004G246600--Sobic005G013500 Sobic004G246600--Sobic002G358300 Sobic004G246600--Sobic004G097100 Sobic001G143100 Sobic001G143100 Sobic004G246600--Sobic001G143100 Sobic002G269100 Sobic002G269100 Sobic004G246600--Sobic002G269100 Sobic004G246600--Sobic002G184300 Sobic003G230100--Sobic004G097100 Sobic003G230100--Sobic002G184300 Sobic004G219800 Sobic004G219800 Sobic003G230100--Sobic004G219800 Sobic002G395300 Sobic002G395300 Sobic003G230100--Sobic002G395300 Sobic006G216700 Sobic006G216700 Sobic003G230100--Sobic006G216700 Sobic004G169200 Sobic004G169200 Sobic003G230100--Sobic004G169200 Sobic003G230100--Sobic009G032000 Sobic003G230100--Sobic002G358300 Sobic002G220000 Sobic002G220000 Sobic003G230100--Sobic002G220000 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic004G097100--Sobic005G013500 Sobic002G388900 Sobic002G388900 Sobic004G097100--Sobic002G388900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic003G427800 Sobic003G427800 Sobic009G205500--Sobic003G427800 Sobic008G158732 Sobic008G158732 Sobic009G205500--Sobic008G158732 Sobic009G205500--Sobic009G183900 Sobic009G205500--Sobic002G184300 Sobic004G229400 Sobic004G229400 Sobic009G205500--Sobic004G229400 Sobic009G205500--Sobic005G013500 Sobic009G205500--Sobic004G229500 Sobic002G351300 Sobic002G351300 Sobic009G205500--Sobic002G351300 Sobic009G205500--Sobic009G032000 Sobic002G358300--Sobic004G308900 Sobic007G122800 Sobic007G122800 Sobic002G358300--Sobic007G122800 Sobic001G195200 Sobic001G195200 Sobic002G358300--Sobic001G195200 Sobic002G358300--Sobic009G032000 Sobic004G191400 Sobic004G191400 Sobic002G358300--Sobic004G191400 Sobic002G358300--Sobic004G169200 Sobic004G191300 Sobic004G191300 Sobic002G358300--Sobic004G191300 Sobic002G358300--Sobic002G395300 Sobic004G294400 Sobic004G294400 Sobic002G358300--Sobic004G294400 Sobic002G234400 Sobic002G234400 Sobic009G183900--Sobic002G234400 Sobic009G183900--Sobic005G013500 Sobic009G183900--Sobic004G229400 Sobic009G144700 Sobic009G144700 Sobic009G183900--Sobic009G144700 Sobic004G108200 Sobic004G108200 Sobic009G183900--Sobic004G108200 Sobic009G183900--Sobic009G205500 Sobic009G183900--Sobic004G097100 Sobic009G183900--Sobic004G229500 Sobic009G183900--Sobic002G388900 Sobic004G308900--Sobic002G358300 Sobic004G308900--Sobic007G122800 Sobic004G308900--Sobic001G195200 Sobic001G256700 Sobic001G256700 Sobic004G308900--Sobic001G256700 Sobic004G308900--Sobic004G191400 Sobic004G308900--Sobic009G032000 Sobic004G308900--Sobic004G246600 Sobic004G308900--Sobic002G388900 Sobic004G308900--Sobic004G191300 Sobic005G013500--Sobic004G229500 Sobic005G013500--Sobic009G183900 Sobic005G013500--Sobic004G246600 Sobic005G013500--Sobic009G032000 Sobic005G013500--Sobic009G144700 Sobic005G013500--Sobic004G097100 Sobic005G013500--Sobic001G363400 Sobic005G013500--Sobic004G294400 Sobic005G013500--Sobic004G108200
Octagon: transcription factors


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