Gene annotation
Transcriptome id Sobic.005G062800.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PQH5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g35630.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.005G062800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G139100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
2 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
3 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.002G199650 - -
6 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
7 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.001G070800 expressed protein -
9 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
10 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
11 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.003G252800 hypothetical protein -
13 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
14 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
15 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
17 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
18 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
20 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic005G062800 Sobic005G062800 Sobic007G139100 Sobic007G139100 Sobic005G062800--Sobic007G139100 Sobic001G177800 Sobic001G177800 Sobic005G062800--Sobic001G177800 Sobic003G403400 Sobic003G403400 Sobic005G062800--Sobic003G403400 Sobic001G402050 Sobic001G402050 Sobic005G062800--Sobic001G402050 Sobic002G199650 Sobic002G199650 Sobic005G062800--Sobic002G199650 Sobic010G009300 Sobic010G009300 Sobic005G062800--Sobic010G009300 Sobic003G280200 Sobic003G280200 Sobic005G062800--Sobic003G280200 Sobic001G070800 Sobic001G070800 Sobic005G062800--Sobic001G070800 Sobic002G187500 Sobic002G187500 Sobic005G062800--Sobic002G187500 Sobic006G067800 Sobic006G067800 Sobic007G139100--Sobic006G067800 Sobic004G205100 Sobic004G205100 Sobic007G139100--Sobic004G205100 Sobic003G436700 Sobic003G436700 Sobic007G139100--Sobic003G436700 Sobic007G139100--Sobic001G402050 Sobic006G083500 Sobic006G083500 Sobic007G139100--Sobic006G083500 Sobic004G171400 Sobic004G171400 Sobic007G139100--Sobic004G171400 Sobic009G215200 Sobic009G215200 Sobic007G139100--Sobic009G215200 Sobic007G184600 Sobic007G184600 Sobic007G139100--Sobic007G184600 Sobic010G063801 Sobic010G063801 Sobic007G139100--Sobic010G063801 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic001G177800--Sobic010G009300 Sobic001G389900 Sobic001G389900 Sobic003G403400--Sobic001G389900 Sobic001G066700 Sobic001G066700 Sobic003G403400--Sobic001G066700 Sobic003G063200 Sobic003G063200 Sobic003G403400--Sobic003G063200 Sobic002G218000 Sobic002G218000 Sobic003G403400--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic010G225300 Sobic010G225300 Sobic003G403400--Sobic010G225300 Sobic009G232800 Sobic009G232800 Sobic003G403400--Sobic009G232800 Sobic004G265700 Sobic004G265700 Sobic003G403400--Sobic004G265700 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic007G197800 Sobic007G197800 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic001G402050--Sobic001G130301 Sobic001G493001 Sobic001G493001 Sobic001G402050--Sobic001G493001 Sobic002G199650--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic002G199650--Sobic003G252800 Sobic005G091500 Sobic005G091500 Sobic002G199650--Sobic005G091500 Sobic010G084400 Sobic010G084400 Sobic002G199650--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic002G199650--Sobic003G286600 Sobic006G153100 Sobic006G153100 Sobic002G199650--Sobic006G153100 Sobic001G317200 Sobic001G317200 Sobic002G199650--Sobic001G317200 Sobic002G183200 Sobic002G183200 Sobic002G199650--Sobic002G183200 Sobic002G199650--Sobic001G070800 Sobic010G009300--Sobic001G177800 Sobic010G009300--Sobic007G184600 Sobic010G009300--Sobic009G139400 Sobic010G009300--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic010G009300--Sobic002G190900 Sobic001G252300 Sobic001G252300 Sobic010G009300--Sobic001G252300 Sobic009G077800 Sobic009G077800 Sobic010G009300--Sobic009G077800 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700 Sobic003G417700 Sobic003G417700 Sobic003G280200--Sobic003G417700 Sobic002G415100 Sobic002G415100 Sobic003G280200--Sobic002G415100 Sobic003G280200--Sobic009G139400 Sobic003G297600 Sobic003G297600 Sobic003G280200--Sobic003G297600 Sobic003G280200--Sobic009G077800 Sobic005G029200 Sobic005G029200 Sobic003G280200--Sobic005G029200 Sobic003G364000 Sobic003G364000 Sobic003G280200--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic003G280200--Sobic002G004900 Sobic002G034800 Sobic002G034800 Sobic003G280200--Sobic002G034800 Sobic001G070800--Sobic003G297600 Sobic001G070800--Sobic009G077800 Sobic003G393700 Sobic003G393700 Sobic001G070800--Sobic003G393700 Sobic002G416600 Sobic002G416600 Sobic001G070800--Sobic002G416600 Sobic001G070800--Sobic009G139400 Sobic001G070800--Sobic001G177800 Sobic001G070800--Sobic001G317200 Sobic001G070800--Sobic006G099900 Sobic001G070800--Sobic001G252300 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic001G281400 Sobic001G281400 Sobic002G187500--Sobic001G281400 Sobic002G187500--Sobic003G393700
Octagon: transcription factors


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