Gene annotation
Transcriptome id Sobic.005G110409.1
Synonym -
Functional annotation -
UniProt A0A109NDS8 , C6JRH6 , A0A109NDR0 , A0A109NDS4 , A0A1Z5RIH7 , C6JRH8
Pfam PF00789
Panther DB PTHR13020 PTHR13020:SF36
NCBI CDD KOG2507; Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G43210 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os11g18880.1 : UBX domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033687
Brachypodium KQJ88657 , KQJ88656 , KQJ88655
Barley HORVU4Hr1G012220.5 , HORVU4Hr1G012220.4 , HORVU4Hr1G012220.7 , HORVU4Hr1G012220.6 , HORVU4Hr1G012220.1 , HORVU4Hr1G012220.3 , HORVU4Hr1G012220.2
Wheat TraesCS4A02G241200 , TraesCS4A02G241200 , TraesCS4A02G241200 , TraesCS4B02G073900 , TraesCS4B02G073900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
2 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
3 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
4 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
5 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
7 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
8 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
9 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
10 Sobic.002G126300 expressed protein -
11 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
12 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
13 Sobic.007G132100 myrosinase precursor, putative, expressed -
14 Sobic.002G111600 expressed protein -
15 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
16 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.003G143200 expressed protein -
18 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
19 Sobic.002G260400 - -
20 Sobic.009G084900 expressed protein -


Gene co-expression network
sample Sobic005G110409 Sobic005G110409 Sobic001G035200 Sobic001G035200 Sobic005G110409--Sobic001G035200 Sobic001G405600 Sobic001G405600 Sobic005G110409--Sobic001G405600 Sobic001G263600 Sobic001G263600 Sobic005G110409--Sobic001G263600 Sobic002G371700 Sobic002G371700 Sobic005G110409--Sobic002G371700 Sobic001G255800 Sobic001G255800 Sobic005G110409--Sobic001G255800 Sobic008G098300 Sobic008G098300 Sobic005G110409--Sobic008G098300 Sobic009G044800 Sobic009G044800 Sobic005G110409--Sobic009G044800 Sobic010G020400 Sobic010G020400 Sobic005G110409--Sobic010G020400 Sobic001G065100 Sobic001G065100 Sobic005G110409--Sobic001G065100 Sobic010G059500 Sobic010G059500 Sobic001G035200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic001G035200--Sobic001G145400 Sobic010G185400 Sobic010G185400 Sobic001G035200--Sobic010G185400 Sobic006G077200 Sobic006G077200 Sobic001G035200--Sobic006G077200 Sobic010G034100 Sobic010G034100 Sobic001G035200--Sobic010G034100 Sobic009G084900 Sobic009G084900 Sobic001G035200--Sobic009G084900 Sobic001G155400 Sobic001G155400 Sobic001G035200--Sobic001G155400 Sobic001G035200--Sobic002G371700 Sobic001G087600 Sobic001G087600 Sobic001G035200--Sobic001G087600 Sobic007G017800 Sobic007G017800 Sobic001G405600--Sobic007G017800 Sobic001G405600--Sobic010G034100 Sobic007G105900 Sobic007G105900 Sobic001G405600--Sobic007G105900 Sobic001G405600--Sobic010G059500 Sobic003G143200 Sobic003G143200 Sobic001G405600--Sobic003G143200 Sobic006G234700 Sobic006G234700 Sobic001G405600--Sobic006G234700 Sobic006G039400 Sobic006G039400 Sobic001G405600--Sobic006G039400 Sobic003G296900 Sobic003G296900 Sobic001G405600--Sobic003G296900 Sobic001G405600--Sobic001G035200 Sobic008G088872 Sobic008G088872 Sobic001G263600--Sobic008G088872 Sobic002G429300 Sobic002G429300 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic005G062200 Sobic005G062200 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic002G042600 Sobic002G042600 Sobic001G263600--Sobic002G042600 Sobic001G273700 Sobic001G273700 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic009G131300 Sobic009G131300 Sobic001G263600--Sobic009G131300 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic003G039000 Sobic003G039000 Sobic001G255800--Sobic003G039000 Sobic001G255800--Sobic001G065100 Sobic001G255800--Sobic004G053500 Sobic001G255800--Sobic002G401500 Sobic001G255800--Sobic003G296900 Sobic001G255800--Sobic005G062200 Sobic001G255800--Sobic008G088872 Sobic001G255800--Sobic001G263600 Sobic003G171400 Sobic003G171400 Sobic001G255800--Sobic003G171400 Sobic004G048800 Sobic004G048800 Sobic008G098300--Sobic004G048800 Sobic001G363500 Sobic001G363500 Sobic008G098300--Sobic001G363500 Sobic010G001100 Sobic010G001100 Sobic008G098300--Sobic010G001100 Sobic001G433800 Sobic001G433800 Sobic008G098300--Sobic001G433800 Sobic008G098300--Sobic003G072200 Sobic007G062800 Sobic007G062800 Sobic008G098300--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic008G098300--Sobic005G112300 Sobic006G040500 Sobic006G040500 Sobic008G098300--Sobic006G040500 Sobic003G360400 Sobic003G360400 Sobic008G098300--Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic001G065100--Sobic002G042600 Sobic002G179400 Sobic002G179400 Sobic001G065100--Sobic002G179400 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic001G065100--Sobic004G322400 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900
Octagon: transcription factors


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