Gene annotation
Transcriptome id Sobic.005G110520.1
Synonym -
Functional annotation -
UniProt A0A109NDL6
Pfam PF04515
Panther DB PTHR12385
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13760 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os07g46240.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a015335
Brachypodium KQK14893
Barley HORVU2Hr1G023690.7 , HORVU2Hr1G023690.4 , HORVU2Hr1G023690.5 , HORVU2Hr1G023690.2 , HORVU2Hr1G023690.3 , HORVU2Hr1G023690.1
Wheat TraesCS2B02G157900 , TraesCS2D02G136600 , TraesCS2D02G136600 , TraesCS2A02G134400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G229250 - -
2 Sobic.002G171500 OsFBX311 - F-box domain containing protein, expressed -
3 Sobic.003G408200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G124000 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
5 Sobic.006G241300 expressed protein -
6 Sobic.004G016800 protein kinase family protein, putative, expressed -
7 Sobic.001G225100 expressed protein -
8 Sobic.005G026800 pentatricopeptide, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
9 Sobic.007G063700 - -
10 Sobic.006G191600 expressed protein -
11 Sobic.003G406900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.004G207300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
13 Sobic.010G154150 - -
14 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
15 Sobic.001G225200 expressed protein -
16 Sobic.004G282301 - -
17 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
18 Sobic.001G225300 - -
19 Sobic.006G019801 - -
20 Sobic.009G183500 expressed protein -


Gene co-expression network
sample Sobic005G110520 Sobic005G110520 Sobic002G229250 Sobic002G229250 Sobic005G110520--Sobic002G229250 Sobic002G171500 Sobic002G171500 Sobic005G110520--Sobic002G171500 Sobic003G408200 Sobic003G408200 Sobic005G110520--Sobic003G408200 Sobic006G124000 Sobic006G124000 Sobic005G110520--Sobic006G124000 Sobic006G241300 Sobic006G241300 Sobic005G110520--Sobic006G241300 Sobic004G016800 Sobic004G016800 Sobic005G110520--Sobic004G016800 Sobic001G225100 Sobic001G225100 Sobic005G110520--Sobic001G225100 Sobic005G026800 Sobic005G026800 Sobic005G110520--Sobic005G026800 Sobic007G063700 Sobic007G063700 Sobic005G110520--Sobic007G063700 Sobic002G229250--Sobic002G171500 Sobic002G229250--Sobic005G110520 Sobic002G048300 Sobic002G048300 Sobic002G229250--Sobic002G048300 Sobic002G171500--Sobic002G229250 Sobic002G171500--Sobic006G124000 Sobic005G117901 Sobic005G117901 Sobic002G171500--Sobic005G117901 Sobic003G117000 Sobic003G117000 Sobic002G171500--Sobic003G117000 Sobic002G171500--Sobic002G048300 Sobic003G408200--Sobic006G241300 Sobic003G296600 Sobic003G296600 Sobic003G408200--Sobic003G296600 Sobic002G330700 Sobic002G330700 Sobic003G408200--Sobic002G330700 Sobic003G408200--Sobic005G026800 Sobic010G154150 Sobic010G154150 Sobic003G408200--Sobic010G154150 Sobic001G247400 Sobic001G247400 Sobic003G408200--Sobic001G247400 Sobic001G471900 Sobic001G471900 Sobic003G408200--Sobic001G471900 Sobic001G056700 Sobic001G056700 Sobic003G408200--Sobic001G056700 Sobic004G157300 Sobic004G157300 Sobic003G408200--Sobic004G157300 Sobic006G257900 Sobic006G257900 Sobic006G124000--Sobic006G257900 Sobic006G191600 Sobic006G191600 Sobic006G124000--Sobic006G191600 Sobic010G218100 Sobic010G218100 Sobic006G124000--Sobic010G218100 Sobic006G124000--Sobic010G154150 Sobic006G124000--Sobic001G225100 Sobic006G124000--Sobic003G117000 Sobic006G124000--Sobic002G171500 Sobic001G311000 Sobic001G311000 Sobic006G124000--Sobic001G311000 Sobic001G076000 Sobic001G076000 Sobic006G124000--Sobic001G076000 Sobic003G406900 Sobic003G406900 Sobic006G241300--Sobic003G406900 Sobic006G241300--Sobic003G408200 Sobic004G164500 Sobic004G164500 Sobic006G241300--Sobic004G164500 Sobic006G241300--Sobic005G026800 Sobic006G241300--Sobic003G296600 Sobic002G254200 Sobic002G254200 Sobic006G241300--Sobic002G254200 Sobic002G278300 Sobic002G278300 Sobic006G241300--Sobic002G278300 Sobic003G293900 Sobic003G293900 Sobic006G241300--Sobic003G293900 Sobic006G241300--Sobic006G191600 Sobic004G016800--Sobic005G110520 Sobic004G016800--Sobic006G241300 Sobic003G137400 Sobic003G137400 Sobic004G016800--Sobic003G137400 Sobic004G016800--Sobic001G311000 Sobic001G326900 Sobic001G326900 Sobic004G016800--Sobic001G326900 Sobic004G016800--Sobic001G056700 Sobic001G281700 Sobic001G281700 Sobic004G016800--Sobic001G281700 Sobic007G177500 Sobic007G177500 Sobic004G016800--Sobic007G177500 Sobic004G016800--Sobic003G408200 Sobic007G150200 Sobic007G150200 Sobic001G225100--Sobic007G150200 Sobic001G225100--Sobic003G296600 Sobic001G225100--Sobic001G247400 Sobic001G032100 Sobic001G032100 Sobic001G225100--Sobic001G032100 Sobic001G225100--Sobic006G257900 Sobic009G183500 Sobic009G183500 Sobic001G225100--Sobic009G183500 Sobic003G093600 Sobic003G093600 Sobic001G225100--Sobic003G093600 Sobic002G284200 Sobic002G284200 Sobic001G225100--Sobic002G284200 Sobic004G221900 Sobic004G221900 Sobic001G225100--Sobic004G221900 Sobic005G026800--Sobic006G241300 Sobic003G208700 Sobic003G208700 Sobic005G026800--Sobic003G208700 Sobic007G068800 Sobic007G068800 Sobic005G026800--Sobic007G068800 Sobic005G026800--Sobic003G408200 Sobic005G026800--Sobic007G063700 Sobic005G026600 Sobic005G026600 Sobic005G026800--Sobic005G026600 Sobic005G026800--Sobic005G110520 Sobic006G019801 Sobic006G019801 Sobic005G026800--Sobic006G019801 Sobic003G201850 Sobic003G201850 Sobic005G026800--Sobic003G201850 Sobic007G063700--Sobic006G019801 Sobic006G268500 Sobic006G268500 Sobic007G063700--Sobic006G268500 Sobic009G071000 Sobic009G071000 Sobic007G063700--Sobic009G071000 Sobic008G140900 Sobic008G140900 Sobic007G063700--Sobic008G140900 Sobic002G369600 Sobic002G369600 Sobic007G063700--Sobic002G369600 Sobic006G227750 Sobic006G227750 Sobic007G063700--Sobic006G227750 Sobic009G157450 Sobic009G157450 Sobic007G063700--Sobic009G157450 Sobic006G234900 Sobic006G234900 Sobic007G063700--Sobic006G234900 Sobic001G225300 Sobic001G225300 Sobic007G063700--Sobic001G225300
Octagon: transcription factors


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