Gene annotation
Transcriptome id Sobic.005G175100.1
Synonym
Functional annotation -
UniProt A0A1B6PT78
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF264
NCBI CDD -
KEGG Orthology K11594; DDX3X, ATP-dependent RNA helicase DDX3X
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G42520 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os11g38670.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a029457 , Zm00025a042241
Brachypodium KQJ87941
Barley HORVU4Hr1G031280.10 , HORVU4Hr1G031280.4 , HORVU4Hr1G031280.5 , HORVU4Hr1G031280.6 , HORVU4Hr1G031280.7 , HORVU4Hr1G031280.1 , HORVU4Hr1G031280.2 , HORVU4Hr1G031280.3 , HORVU4Hr1G031280.8 , HORVU4Hr1G031280.9
Wheat TraesCS4D02G148700 , TraesCS4B02G126000 , TraesCS4A02G141400
Populus -


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cDNA sequences
Sobic.005G175100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
2 Sobic.010G169300 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
3 Sobic.009G195700 hydrolase, alpha/beta fold family domain containing protein, expressed K01259: proline iminopeptidase
4 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
5 Sobic.008G116600 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed -
6 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
7 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
9 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
10 Sobic.002G332200 proteasome inhibitor-related, putative, expressed K06700: proteasome inhibitor subunit 1 (PI31)
11 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
12 Sobic.001G193500 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
13 Sobic.003G138900 aminotransferase, putative, expressed -
14 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
15 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
16 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
17 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
18 Sobic.010G169700 pollen-specific protein SF21, putative, expressed -
19 Sobic.008G190100 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
20 Sobic.009G101300 phox domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G175100 Sobic005G175100 Sobic001G537500 Sobic001G537500 Sobic005G175100--Sobic001G537500 Sobic010G169300 Sobic010G169300 Sobic005G175100--Sobic010G169300 Sobic009G195700 Sobic009G195700 Sobic005G175100--Sobic009G195700 Sobic009G072000 Sobic009G072000 Sobic005G175100--Sobic009G072000 Sobic008G116600 Sobic008G116600 Sobic005G175100--Sobic008G116600 Sobic002G246700 Sobic002G246700 Sobic005G175100--Sobic002G246700 Sobic010G081700 Sobic010G081700 Sobic005G175100--Sobic010G081700 Sobic001G506000 Sobic001G506000 Sobic005G175100--Sobic001G506000 Sobic002G116500 Sobic002G116500 Sobic005G175100--Sobic002G116500 Sobic006G073200 Sobic006G073200 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic001G537500--Sobic002G246700 Sobic001G193500 Sobic001G193500 Sobic010G169300--Sobic001G193500 Sobic004G208500 Sobic004G208500 Sobic010G169300--Sobic004G208500 Sobic009G077600 Sobic009G077600 Sobic010G169300--Sobic009G077600 Sobic004G207900 Sobic004G207900 Sobic010G169300--Sobic004G207900 Sobic007G177300 Sobic007G177300 Sobic010G169300--Sobic007G177300 Sobic001G467100 Sobic001G467100 Sobic010G169300--Sobic001G467100 Sobic001G023100 Sobic001G023100 Sobic010G169300--Sobic001G023100 Sobic001G460500 Sobic001G460500 Sobic010G169300--Sobic001G460500 Sobic001G161700 Sobic001G161700 Sobic010G169300--Sobic001G161700 Sobic004G247100 Sobic004G247100 Sobic009G195700--Sobic004G247100 Sobic006G212900 Sobic006G212900 Sobic009G195700--Sobic006G212900 Sobic002G142700 Sobic002G142700 Sobic009G195700--Sobic002G142700 Sobic001G403400 Sobic001G403400 Sobic009G195700--Sobic001G403400 Sobic009G195700--Sobic002G116500 Sobic008G059900 Sobic008G059900 Sobic009G195700--Sobic008G059900 Sobic001G004100 Sobic001G004100 Sobic009G195700--Sobic001G004100 Sobic010G073500 Sobic010G073500 Sobic009G195700--Sobic010G073500 Sobic010G172400 Sobic010G172400 Sobic009G195700--Sobic010G172400 Sobic006G157000 Sobic006G157000 Sobic009G072000--Sobic006G157000 Sobic001G468600 Sobic001G468600 Sobic009G072000--Sobic001G468600 Sobic003G216500 Sobic003G216500 Sobic009G072000--Sobic003G216500 Sobic001G486700 Sobic001G486700 Sobic009G072000--Sobic001G486700 Sobic006G002201 Sobic006G002201 Sobic009G072000--Sobic006G002201 Sobic009G072000--Sobic004G275600 Sobic005G105500 Sobic005G105500 Sobic009G072000--Sobic005G105500 Sobic003G309300 Sobic003G309300 Sobic009G072000--Sobic003G309300 Sobic006G213400 Sobic006G213400 Sobic009G072000--Sobic006G213400 Sobic004G033200 Sobic004G033200 Sobic008G116600--Sobic004G033200 Sobic008G116600--Sobic006G212900 Sobic002G332200 Sobic002G332200 Sobic008G116600--Sobic002G332200 Sobic002G385300 Sobic002G385300 Sobic008G116600--Sobic002G385300 Sobic008G116600--Sobic009G195700 Sobic004G058600 Sobic004G058600 Sobic008G116600--Sobic004G058600 Sobic004G066500 Sobic004G066500 Sobic008G116600--Sobic004G066500 Sobic003G126800 Sobic003G126800 Sobic008G116600--Sobic003G126800 Sobic003G200600 Sobic003G200600 Sobic008G116600--Sobic003G200600 Sobic001G455800 Sobic001G455800 Sobic002G246700--Sobic001G455800 Sobic002G408900 Sobic002G408900 Sobic002G246700--Sobic002G408900 Sobic009G045900 Sobic009G045900 Sobic002G246700--Sobic009G045900 Sobic009G249800 Sobic009G249800 Sobic002G246700--Sobic009G249800 Sobic002G246700--Sobic004G208500 Sobic002G246700--Sobic001G537500 Sobic007G071900 Sobic007G071900 Sobic002G246700--Sobic007G071900 Sobic008G085700 Sobic008G085700 Sobic002G246700--Sobic008G085700 Sobic001G117800 Sobic001G117800 Sobic002G246700--Sobic001G117800 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700 Sobic001G487100 Sobic001G487100 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic002G116500--Sobic001G193500 Sobic008G016100 Sobic008G016100 Sobic002G116500--Sobic008G016100 Sobic003G118400 Sobic003G118400 Sobic002G116500--Sobic003G118400 Sobic002G116500--Sobic004G247100 Sobic001G382200 Sobic001G382200 Sobic002G116500--Sobic001G382200 Sobic003G408300 Sobic003G408300 Sobic002G116500--Sobic003G408300 Sobic006G084000 Sobic006G084000 Sobic002G116500--Sobic006G084000 Sobic002G144275 Sobic002G144275 Sobic002G116500--Sobic002G144275 Sobic002G116500--Sobic009G195700
Octagon: transcription factors


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