Gene annotation
Transcriptome id Sobic.005G184100.1
Synonym Sb05g024250
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y6B6
Pfam PF13639
Panther DB PTHR14155:SF101 PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G33565 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g39640.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043995 , Zm00025a015880 , Zm00025a047333 , Zm00025a014122
Brachypodium KQJ90585
Barley HORVU5Hr1G069990.4 , HORVU5Hr1G069990.1 , HORVU5Hr1G069990.2 , HORVU5Hr1G069990.3 , HORVU2Hr1G079170.1 , HORVU6Hr1G009820.3 , HORVU6Hr1G009820.2
Wheat TraesCS2A02G318300
Populus -


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cDNA sequences
Sobic.005G184100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G176100 expressed protein -
2 Sobic.010G136900 white-brown complex homolog protein 11, putative, expressed -
3 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
4 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
5 Sobic.010G261400 expressed protein -
6 Sobic.002G046700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@versicolorin reductase, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
7 Sobic.006G182700 3-hexulose-6-phosphate isomerase, putative, expressed -
8 Sobic.010G171400 expressed protein -
9 Sobic.002G334500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
10 Sobic.002G088200 expressed protein -
11 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
12 Sobic.009G153200 U-box domain containing protein, expressed -
13 Sobic.004G343100 YCF37, putative, expressed -
14 Sobic.002G101800 OsFBX281 - F-box domain containing protein, expressed -
15 Sobic.004G033900 expressed protein -
16 Sobic.003G111600 expressed protein -
17 Sobic.002G058600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsFBX237 - F-box domain containing protein, expressed -
18 Sobic.003G008300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
19 Sobic.002G349300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.002G406400 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G184100 Sobic005G184100 Sobic006G176100 Sobic006G176100 Sobic005G184100--Sobic006G176100 Sobic010G136900 Sobic010G136900 Sobic005G184100--Sobic010G136900 Sobic002G283800 Sobic002G283800 Sobic005G184100--Sobic002G283800 Sobic001G516800 Sobic001G516800 Sobic005G184100--Sobic001G516800 Sobic010G261400 Sobic010G261400 Sobic005G184100--Sobic010G261400 Sobic002G046700 Sobic002G046700 Sobic005G184100--Sobic002G046700 Sobic006G182700 Sobic006G182700 Sobic005G184100--Sobic006G182700 Sobic010G171400 Sobic010G171400 Sobic005G184100--Sobic010G171400 Sobic002G334500 Sobic002G334500 Sobic005G184100--Sobic002G334500 Sobic006G176100--Sobic005G184100 Sobic006G176100--Sobic002G046700 Sobic006G176100--Sobic002G283800 Sobic006G176100--Sobic001G516800 Sobic006G176100--Sobic010G136900 Sobic001G161300 Sobic001G161300 Sobic006G176100--Sobic001G161300 Sobic006G176100--Sobic002G334500 Sobic004G033900 Sobic004G033900 Sobic006G176100--Sobic004G033900 Sobic006G176100--Sobic010G171400 Sobic002G101800 Sobic002G101800 Sobic010G136900--Sobic002G101800 Sobic003G191800 Sobic003G191800 Sobic010G136900--Sobic003G191800 Sobic005G102200 Sobic005G102200 Sobic010G136900--Sobic005G102200 Sobic007G139000 Sobic007G139000 Sobic010G136900--Sobic007G139000 Sobic010G136900--Sobic002G283800 Sobic006G123700 Sobic006G123700 Sobic010G136900--Sobic006G123700 Sobic003G111600 Sobic003G111600 Sobic010G136900--Sobic003G111600 Sobic010G152700 Sobic010G152700 Sobic010G136900--Sobic010G152700 Sobic002G344100 Sobic002G344100 Sobic010G136900--Sobic002G344100 Sobic002G283800--Sobic010G136900 Sobic002G283800--Sobic001G516800 Sobic002G283800--Sobic002G101800 Sobic002G285450 Sobic002G285450 Sobic002G283800--Sobic002G285450 Sobic002G283800--Sobic007G139000 Sobic004G132400 Sobic004G132400 Sobic002G283800--Sobic004G132400 Sobic002G283800--Sobic003G191800 Sobic001G147400 Sobic001G147400 Sobic002G283800--Sobic001G147400 Sobic002G283800--Sobic003G111600 Sobic010G208000 Sobic010G208000 Sobic001G516800--Sobic010G208000 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G516800--Sobic001G147400 Sobic004G034500 Sobic004G034500 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G543500 Sobic001G543500 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic003G028800 Sobic003G028800 Sobic010G261400--Sobic003G028800 Sobic008G050100 Sobic008G050100 Sobic010G261400--Sobic008G050100 Sobic010G261400--Sobic006G123700 Sobic010G261400--Sobic002G101800 Sobic010G261400--Sobic010G136900 Sobic002G228500 Sobic002G228500 Sobic010G261400--Sobic002G228500 Sobic003G347680 Sobic003G347680 Sobic010G261400--Sobic003G347680 Sobic010G261400--Sobic005G184100 Sobic001G303000 Sobic001G303000 Sobic010G261400--Sobic001G303000 Sobic002G046700--Sobic006G176100 Sobic002G046700--Sobic010G171400 Sobic002G046700--Sobic002G334500 Sobic004G307700 Sobic004G307700 Sobic002G046700--Sobic004G307700 Sobic003G260800 Sobic003G260800 Sobic002G046700--Sobic003G260800 Sobic007G022200 Sobic007G022200 Sobic002G046700--Sobic007G022200 Sobic002G199100 Sobic002G199100 Sobic002G046700--Sobic002G199100 Sobic009G153200 Sobic009G153200 Sobic002G046700--Sobic009G153200 Sobic003G008300 Sobic003G008300 Sobic002G046700--Sobic003G008300 Sobic008G083650 Sobic008G083650 Sobic006G182700--Sobic008G083650 Sobic002G367850 Sobic002G367850 Sobic006G182700--Sobic002G367850 Sobic006G278600 Sobic006G278600 Sobic006G182700--Sobic006G278600 Sobic003G350000 Sobic003G350000 Sobic006G182700--Sobic003G350000 Sobic005G066800 Sobic005G066800 Sobic006G182700--Sobic005G066800 Sobic004G355401 Sobic004G355401 Sobic006G182700--Sobic004G355401 Sobic001G029900 Sobic001G029900 Sobic006G182700--Sobic001G029900 Sobic007G206550 Sobic007G206550 Sobic006G182700--Sobic007G206550 Sobic007G038900 Sobic007G038900 Sobic006G182700--Sobic007G038900 Sobic010G171400--Sobic002G334500 Sobic010G171400--Sobic002G046700 Sobic009G075100 Sobic009G075100 Sobic010G171400--Sobic009G075100 Sobic009G069901 Sobic009G069901 Sobic010G171400--Sobic009G069901 Sobic002G298400 Sobic002G298400 Sobic010G171400--Sobic002G298400 Sobic004G143801 Sobic004G143801 Sobic010G171400--Sobic004G143801 Sobic007G168000 Sobic007G168000 Sobic010G171400--Sobic007G168000 Sobic002G087500 Sobic002G087500 Sobic010G171400--Sobic002G087500 Sobic009G070800 Sobic009G070800 Sobic010G171400--Sobic009G070800 Sobic009G115400 Sobic009G115400 Sobic002G334500--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic002G334500--Sobic009G115300 Sobic006G007650 Sobic006G007650 Sobic002G334500--Sobic006G007650 Sobic002G108400 Sobic002G108400 Sobic002G334500--Sobic002G108400 Sobic002G202700 Sobic002G202700 Sobic002G334500--Sobic002G202700 Sobic006G005500 Sobic006G005500 Sobic002G334500--Sobic006G005500 Sobic001G125700 Sobic001G125700 Sobic002G334500--Sobic001G125700 Sobic001G201800 Sobic001G201800 Sobic002G334500--Sobic001G201800 Sobic007G076000 Sobic007G076000 Sobic002G334500--Sobic007G076000
Octagon: transcription factors


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