Gene annotation
Transcriptome id Sobic.005G220101.1
Synonym -
Functional annotation -
UniProt A0A1Z5RJV7
Pfam -
Panther DB PTHR34805
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os11g46250.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
3 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
4 Sobic.001G049800 DDT domain containing protein, putative, expressed -
5 Sobic.002G192500 ES43 protein, putative, expressed -
6 Sobic.006G059500 expressed protein K13150: COIL, coilin
7 Sobic.001G453500 expressed protein -
8 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
9 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
10 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
11 Sobic.010G224700 - K17680: twinkle protein
12 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
13 Sobic.004G027300 expressed protein -
14 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
15 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
16 Sobic.004G111000 bromodomain containing protein, expressed -
17 Sobic.006G109400 pentatricopeptide, putative, expressed -
18 Sobic.006G273900 expressed protein -
19 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
20 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A


Gene co-expression network
sample Sobic005G220101 Sobic005G220101 Sobic006G111200 Sobic006G111200 Sobic005G220101--Sobic006G111200 Sobic004G151000 Sobic004G151000 Sobic005G220101--Sobic004G151000 Sobic007G059700 Sobic007G059700 Sobic005G220101--Sobic007G059700 Sobic001G049800 Sobic001G049800 Sobic005G220101--Sobic001G049800 Sobic002G192500 Sobic002G192500 Sobic005G220101--Sobic002G192500 Sobic006G059500 Sobic006G059500 Sobic005G220101--Sobic006G059500 Sobic001G453500 Sobic001G453500 Sobic005G220101--Sobic001G453500 Sobic007G060600 Sobic007G060600 Sobic005G220101--Sobic007G060600 Sobic009G096100 Sobic009G096100 Sobic005G220101--Sobic009G096100 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700 Sobic004G151000--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic002G378100 Sobic002G378100 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic007G059700--Sobic006G111200 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic002G192500--Sobic009G096100 Sobic006G056000 Sobic006G056000 Sobic002G192500--Sobic006G056000 Sobic006G047100 Sobic006G047100 Sobic002G192500--Sobic006G047100 Sobic002G192500--Sobic006G111200 Sobic010G050700 Sobic010G050700 Sobic002G192500--Sobic010G050700 Sobic007G043900 Sobic007G043900 Sobic002G192500--Sobic007G043900 Sobic008G056900 Sobic008G056900 Sobic002G192500--Sobic008G056900 Sobic001G087100 Sobic001G087100 Sobic002G192500--Sobic001G087100 Sobic001G485600 Sobic001G485600 Sobic002G192500--Sobic001G485600 Sobic006G059500--Sobic004G151000 Sobic006G059500--Sobic001G049800 Sobic002G132600 Sobic002G132600 Sobic006G059500--Sobic002G132600 Sobic006G059500--Sobic006G111200 Sobic004G215900 Sobic004G215900 Sobic006G059500--Sobic004G215900 Sobic006G059500--Sobic007G060600 Sobic006G140400 Sobic006G140400 Sobic006G059500--Sobic006G140400 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500 Sobic009G096100--Sobic008G056900 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic009G096100--Sobic006G056000 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700
Octagon: transcription factors


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